View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_52 (Length: 239)
Name: NF7987_low_52
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22631345 - 22631128
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22631345 |
ttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatg |
22631246 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctcca |
200 |
Q |
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||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22631245 |
tcattgatgattatatcttccatgaggaacaacatgctcctgatcctggatgtgctgctggagccgttgacttggtgaaaactaagattcttcgtctcca |
22631146 |
T |
|
| Q |
201 |
aattgcttagaagattca |
218 |
Q |
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||||||||| |||||||| |
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| T |
22631145 |
aattgcttacaagattca |
22631128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22632741 - 22632524
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
| |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
22632741 |
ttcatcaacgatgtggatagaacagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatg |
22632642 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22632641 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctactggagctattgacttggtgaaaactaagattcttcgtctcca |
22632542 |
T |
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| Q |
201 |
aattgcttagaagattca |
218 |
Q |
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||||||| | |||||||| |
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| T |
22632541 |
aattgctgacaagattca |
22632524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22468824 - 22468607
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
22468824 |
ttcatcaacgatgcggatagaagagctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttatcacatagaagatg |
22468725 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctcca |
200 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
22468724 |
tggttgatgattatatcttacttgaggaacaacaatcttctgatcctggatgtgctgctggtgctgttgacttggtgaaaactaagatccttcgtctcca |
22468625 |
T |
|
| Q |
201 |
aattgcttagaagattca |
218 |
Q |
| |
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||| |||| |||||||| |
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| T |
22468624 |
aataacttacaagattca |
22468607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22358881 - 22358721
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
22358881 |
ttcatcaacgatgcggataaaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatg |
22358782 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctgg |
161 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
22358781 |
tcattgatgattatatctttcttgaggaacaacatgctcctgatcctggatgtgctgctgg |
22358721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 22636382 - 22636223
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
22636382 |
ttcatcaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatg |
22636283 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctg |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |
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| T |
22636282 |
tcattgatgattatatctttcttgaggaacaacatgctcctgatcctggttgtgctgctg |
22636223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22368785 - 22368571
Alignment:
| Q |
1 |
ttcaccaacgatgcggatagaagggctgatgatgtagaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| ||||||| |
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| T |
22368785 |
ttcatcaacgatgcggatagaagatctgatgatgtagaagacaagaaaatcaaagacatgacgaagcagctgatagaaacatcttttcacatagaagatg |
22368686 |
T |
|
| Q |
101 |
tcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctcca |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||| | ||||||| | || |||||||| |
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| T |
22368685 |
tcattgatgattatatcttccttgaggaacatcaatcttctgaacctggatgtgctgct---gctgttgacttgctcaaaactacaaaactacgtctcca |
22368589 |
T |
|
| Q |
201 |
aattgcttagaagattca |
218 |
Q |
| |
|
||||||||| |||||||| |
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| T |
22368588 |
aattgcttataagattca |
22368571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 22431978 - 22431810
Alignment:
| Q |
47 |
aaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaatcttctgatcc |
146 |
Q |
| |
|
||||||||| | |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
22431978 |
aaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcc |
22431879 |
T |
|
| Q |
147 |
tggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaattgcttagaagattca |
218 |
Q |
| |
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|||||| |||||||| | |||||||| | |||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
22431878 |
tggatgcgctgctgg---tcttgacttgatcaaaactaagattcttcgtctccaaatagcttacaagattca |
22431810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 22443572 - 22443416
Alignment:
| Q |
44 |
agaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaatcttctga |
143 |
Q |
| |
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|||||||||||| |||||||| ||| |||| ||||||||||| || || |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
22443572 |
agaaaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttccttgaagaacatcaatcttctga |
22443473 |
T |
|
| Q |
144 |
tcctggatgtgctgctggagctgttgacttggtgaaaactaagattcttcgtctccaaat |
203 |
Q |
| |
|
|| ||||||||||||||| | |||||||| | |||||||||||||||||||||||||| |
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|
| T |
22443472 |
tcttggatgtgctgctgg---tcttgacttgatcaaaactaagattcttcgtctccaaat |
22443416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 22437435 - 22437350
Alignment:
| Q |
76 |
gaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaatcttctgatcctggatgtgctgctgg |
161 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||||| ||||| |
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| T |
22437435 |
gaagcatcttttgacatagaagatgtcattgatgattatatcttccatgaggaacaacaagctcctgatcctggatgtgccgctgg |
22437350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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