View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_57 (Length: 221)
Name: NF7987_low_57
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_57 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 30946238 - 30946408
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946238 |
atgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
30946337 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30946338 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
30946408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 42270165 - 42269995
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270165 |
atgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacacagtaatttgttcc |
42270066 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42270065 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
42269995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 48697876 - 48698046
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697876 |
atgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacacagtaatttgttcc |
48697975 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48697976 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
48698046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 2003154 - 2002975
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||| |||||||| ||||||| || || || |||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| | |
|
|
| T |
2003154 |
tcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagaatggattccttgcaatatgcaatgcactctaactgtcacaatacacaaca |
2003055 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||| || ||||||||||||| ||||||| ||||| ||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
2003054 |
atttgttgttgactgtgcccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcatagctgccat |
2002975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 41722672 - 41722502
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722672 |
atgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacacagtaatttgttcc |
41722573 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41722572 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
41722502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 34356200 - 34356102
Alignment:
| Q |
92 |
actgtcacaatacacagtaatttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34356200 |
actgtcacaatacacagtaattttctcttgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccat |
34356102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 34359460 - 34359375
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgt |
96 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34359460 |
tcgaacaaaatgatattgaacgccaatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgtaaggcactctgactgt |
34359375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 9440146 - 9440316
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440146 |
atgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacacagtaatttgttcc |
9440245 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9440246 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
9440316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 24594537 - 24594716
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
24594537 |
tcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtcacaatacacaaca |
24594636 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||| || |||| |||||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
24594637 |
atttgttgttgactgtggccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgtgtagctgccat |
24594716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 27874764 - 27874934
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874764 |
atgatattgaatgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatatgcaaggcactctgactgtcacaatacacagtaatttgttcc |
27874863 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27874864 |
tgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgagtagctgccat |
27874934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 26976939 - 26977118
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976939 |
tcgaacaaaatgatattgaacacctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
26977038 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
26977039 |
attttctcctgcttgtgcccgagttcctccattaacctttgcacccagatagcttccttgcatgcttgggtagctgccat |
26977118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 1472511 - 1472690
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||| |||||||| ||||||| || || || |||||||| ||||||| | |||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
1472511 |
tcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattacatgcaatgtgcaatgcactctgactgtcacaatacacaaca |
1472610 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
1472611 |
atttgttgttgactgtgcacgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccat |
1472690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 21965640 - 21965489
Alignment:
| Q |
23 |
atattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgt |
122 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||| ||||| ||| ||| |
|
|
| T |
21965640 |
atattgaacgcctgtgtgctccgttcttgaatgaaaagttggattccttgaaatgtgcaaggtactctgactgt--caatacacaataattcgttgctgc |
21965543 |
T |
|
| Q |
123 |
ttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgct |
176 |
Q |
| |
|
|| |||| |||| ||| ||||||||| |||||||||||| |||| | |||||| |
|
|
| T |
21965542 |
ttatgcctaagttgctcaattaaccttcgcatccaaatagtttccatgcatgct |
21965489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 18967341 - 18967256
Alignment:
| Q |
9 |
tgtcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgact |
94 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
18967341 |
tgtcgaacaaaatgatatttaacgcctatgtgtttcgtccttgaatgaaaagttggattccttgcaatgtgtaaggcactctgact |
18967256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 18967241 - 18967197
Alignment:
| Q |
143 |
taacctttgcatccaaatagcttccttacatgcttgagtagctgc |
187 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
18967241 |
taacgtttgcatccaaatagcttcattgcatgcttgggtagctgc |
18967197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 5819321 - 5819500
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819321 |
tcgaacaaaatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
5819420 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
5819421 |
attttctcctgcttgtgcccgagttcctccattaacctttgcatccagatagcttccttgcatgcttgggtagctgccat |
5819500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 54545416 - 54545237
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
54545416 |
tcgaataaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagttgaattccttgcaatgtgcaatgcactctgactgtcacaatacacaata |
54545317 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
54545316 |
atttgttcctgcttgtgcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccat |
54545237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 42589219 - 42589040
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||| |||||||| |||||||| || || || |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
42589219 |
tcgaacaaaatggtattgaacacctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactatgactgtcacaatacacaaca |
42589120 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||| || ||||||||||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
42589119 |
atttgttgttgactgtgcccgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccat |
42589040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 829750 - 829571
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829750 |
tcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
829651 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
829650 |
attttctcctgcttgtgcccgagttcctccattaacctttgcatccagatagcttccttgcatgcttgggtagctgccat |
829571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 28715344 - 28715175
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || |||||||||||| |||||||||||| |||||||| |||||| |||||| ||||||||||| | ||| ||||||||||||||| |
|
|
| T |
28715344 |
tcgaacaaaatgatattgaacacctatgtgcttcatccttgaacgaaaagttggatt----------tgcaaggcactataactatcacaatacacagta |
28715255 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28715254 |
atttgctcctgcttgtgcccgagtacctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccat |
28715175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 13840984 - 13841132
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
|||||||||||| | |||||| || ||||||||||||||| || ||| ||||||||||| |||||| ||| | |||||||||||| ||||||||| | |
|
|
| T |
13840984 |
atgatattgaacacttatgtgttttgtccttgaatgaaaaa-tgaatttcttgcaatgtgaaaggcattctaattgtcacaatacatagtaatttgatgt |
13841082 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttcctt |
169 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13841083 |
tgtttgtgcccaagttcctccattaacctttgcattcaaataacttcctt |
13841132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 28081 - 28260
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28081 |
tcgaacaaaatgatattgaacgcctatgtgtttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
28180 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28181 |
atttaatcctgcttgtgcacgagttcctccataaacctttgcaaccaaatagcttccttgcatgcttgagtagctgccat |
28260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 2324175 - 2324332
Alignment:
| Q |
27 |
tgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgtttgt |
126 |
Q |
| |
|
|||||| | |||| ||| ||| |||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||| |||| ||||| |||| |
|
|
| T |
2324175 |
tgaacgtcaatgttctttgtctttgaatgaaaagatggattccttgcaatgtccac------ctgactgccacaatacaaagtgattttctcctgcttgt |
2324268 |
T |
|
| Q |
127 |
gcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2324269 |
gcccgagttcctccattaacctttgcatccaaatagcttccttgcatgcttgggtagctgccat |
2324332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 7504809 - 7504988
Alignment:
| Q |
11 |
tcgaagaatatgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagta |
110 |
Q |
| |
|
||||| || ||| |||||||| ||||||| || || || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
7504809 |
tcgaacaaaatggtattgaacatctatgtgttttgttctcgaatgaaagactggattccttgcaatgtgcaatgcactctgactgtcacaatacacaaca |
7504908 |
T |
|
| Q |
111 |
atttgttcctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttccttacatgcttgagtagctgccat |
190 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
7504909 |
atttgttgttgactgtgcacgagttcttccattagtctttgtatccaaatagcttccttgcaagcttgcgtagctgccat |
7504988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 22510175 - 22510030
Alignment:
| Q |
24 |
tattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcctgtt |
123 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||| |||| |||||| |||| |||||||||| |||||||||| |||||||||| ||||||||||| | | |
|
|
| T |
22510175 |
tattgaacgcctttgtgcatcgtcttggaatacaaagttggattgcttgaaatgtgcaagacactctgactatcacaatacaaagtaatttgttgatact |
22510076 |
T |
|
| Q |
124 |
tgtgcccgagttcctccattaacctttgcatccaaatagcttcctt |
169 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22510075 |
tgtgcgcgagttcctccattaaccttatcatccaaatagcttcctt |
22510030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 41413635 - 41413783
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaagctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgttcc |
119 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| || |||||||| ||||||||||||||| |||||| ||| |||||||| ||| ||||||||| |
|
|
| T |
41413635 |
atgatattgaacgcctacatgccttgtccttgaatggaaggctggattacttgcaatgtgcaagacactctaactatcacaatatacaataatttgttat |
41413734 |
T |
|
| Q |
120 |
tgtttgtgcccgagttcctccattaacctttgcatccaaatagcttcct |
168 |
Q |
| |
|
||| |||| ||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
41413735 |
tgtctgtgtttgagttcctcaattaacatttgcatcaaaatagcttcct |
41413783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 34973743 - 34973592
Alignment:
| Q |
20 |
atgatattgaacgcctatgtgcttcgtccttgaatgaaaa--gctggattccttgcaatgtgcaaggcactctgactgtcacaatacacagtaatttgtt |
117 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||| | |||||| | | ||||||||||| |||| | ||| ||| |||||||| |||| | || |
|
|
| T |
34973743 |
atgatattaaatgcctatttgcttcgtccttgaatgaaaaaagttggatttcatacaatgtgcaagacactttaactttcataatacacaataatgtctt |
34973644 |
T |
|
| Q |
118 |
cctgtttgtgcccgagttcctccattaacctttgcatccaaatagcttcctt |
169 |
Q |
| |
|
|| ||||| | ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
34973643 |
gatgcttgtgtctaagtccctccattaacctttgcatccaaacagcttcctt |
34973592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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