View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_58 (Length: 221)
Name: NF7987_low_58
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_58 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44949854 - 44950074
Alignment:
| Q |
1 |
ctaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataatacgtgctttcccgaagatgaaattataaattaa |
100 |
Q |
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| T |
44949854 |
ctaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataatacatactttcccgaagatgaaattataaattaa |
44949953 |
T |
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| Q |
101 |
aacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaaaatgaaataggcactatgacaagtcattatgaca |
200 |
Q |
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| T |
44949954 |
aacgttaagtcaatcataatagagaacctttgaacactatccatctaaaattttgaacatggaaaaaatgaaataggcactatgacaagtcattatgaca |
44950053 |
T |
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| Q |
201 |
atgtagacaaaatgatcatta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44950054 |
atgtagacaaaatgatcatta |
44950074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44943940 - 44944157
Alignment:
| Q |
1 |
ctaactcgttcaaatggttaattgaaaatgaaaagtactttaca-gtttacactttcaagtaaataatacgtgctttcccgaagatgaaattataaatta |
99 |
Q |
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| T |
44943940 |
ctaactcattcaaatggttaattgaagatgaaggatactttacaagtttacactttcaagtaaataatac----tttcctgaagatgaaattataaatta |
44944035 |
T |
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| Q |
100 |
aaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaaaatgaaataggcactatgacaagtcattatg-a |
198 |
Q |
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| T |
44944036 |
aaatgttaaatggatcatactagagaa-cattaaatcctatccatctaaaattttgatcactgaaaaaacaaaataggcacgatgacaagtcaatatgca |
44944134 |
T |
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| Q |
199 |
caatgtagacaaaatgatcatta |
221 |
Q |
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| T |
44944135 |
caatgtagacaaaatgatcatta |
44944157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 6470707 - 6470916
Alignment:
| Q |
9 |
ttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataatacgtgctttcccgaagatgaaattataaattaaaacgttaa |
108 |
Q |
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| T |
6470707 |
ttcaaatggttaattgaaaattggaagtactttacagtttacactttcaagtaaataatac---ttttcctgaaaatgaagttataaattaaaatggtga |
6470803 |
T |
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| Q |
109 |
gtcaatc-ataatagagaacctttgaacccaatttggctaaaatttt-gaacatggaaaaaatgaaataggcactatgacaagtcattatg-acaatgta |
205 |
Q |
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|| |||| |||||| |||| |||| ||||| || | || ||||||| |||||||||||||| |||||||||||||||||||||| |||| | ||||| |
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| T |
6470804 |
gtgaatcaataataaagaatctttcaaccctatccgtctcaaattttggaacatggaaaaaacaaaataggcactatgacaagtcaatatgcattatgta |
6470903 |
T |
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| Q |
206 |
gacaaaatgatca |
218 |
Q |
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| T |
6470904 |
cacaaaatgatca |
6470916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 418989 - 418833
Alignment:
| Q |
38 |
ctttacagtttacactttcaagtaaataatacgtgctttcccgaagatgaaattataaattaaaacgttaagtc-----aatcataatagagaacctttg |
132 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||| ||| |||||||||| |||| |||| |
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| T |
418989 |
ctttacagtttacactttcaagtaaataatat----tttcctgaaaatgaaattataaattaaaatgttgagttgagtgaatcataataaagaatcttta |
418894 |
T |
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| Q |
133 |
aacccaatttggctaaaattttg-aacatggaaaaaatgaaataggcactatgacaagtca |
192 |
Q |
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| T |
418893 |
aaccctactcatctaaaattttggaacatggaaaaaatgaaataggcaccatgacaagtca |
418833 |
T |
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