View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_6 (Length: 587)
Name: NF7987_low_6
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 5351820 - 5352400
Alignment:
| Q |
1 |
tttgagaaacataggctacctcaccatgcaaattaagctgcatttagcgacattataattaagataacaacattgttgatacatataattaatcaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351820 |
tttgagaaacataggctacctcaccatgcaaattaagctgcatttagcgacattataattaagataacaacattgttgatacatataattaatcaaataa |
5351919 |
T |
|
| Q |
101 |
aagtactgcatcaagacattattctctctcgttcgtttttagttgtcgttttaagtttatttacatgtatcaacaaataaatgtaacgcaacttttatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5351920 |
aagtactgcatcaagacattattctctctcgttcgtttttagttgtcgttttaagtttatttacatgtatcaacaaataaatgtaacacaacttttatac |
5352019 |
T |
|
| Q |
201 |
aaaatcgacggttaaaaaggaatggagagagtgannnnnnnggttcatactcacagttccacaaactttaggcatttctccaaggatagcatgaagcaaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352020 |
aaaatcgatggttaaaaaggaatggagagagtgatttttttggttcatactcacagttccacaaactttaggcatttctccaaggatagcatgaagcaaa |
5352119 |
T |
|
| Q |
301 |
gaagacttgccagccccaactggtccacaaactgcaactttttcaccatgtttgatgccgaaattaatttgtctcaaagtaggtgtaactgatccctcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352120 |
gaagacttgccagccccaactggtccacaaactgcaactttttcaccatgtttgatgccgaaattaatttgtctcaaagtaggtgtaactgatccctcat |
5352219 |
T |
|
| Q |
401 |
cccagctgaaatcagcttcctctatctcaatgcatttacctgattttgaaacataaatgctcttcttttggtaggaagtatttatctcatcatcaaacag |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352220 |
cccaactgaaatcagcttcctctatctcaatgcatttacctgattttgaaacataaatgctcttcttttggtaggaagtatttatctcatcatcaaacag |
5352319 |
T |
|
| Q |
501 |
aaaagtgttaagcctatcaaatgagactttaacttgaataataacagaaacagcctcgggtataaacctcacaggttctgc |
581 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5352320 |
aaaaatgttaagcctatcaaatgagactttaacttgaataataacagaaacagcttcgggtataaacctcacaggttctgc |
5352400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University