View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_60 (Length: 210)
Name: NF7987_low_60
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 49918931 - 49918766
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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| T |
49918931 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatttgggctctgttattatgctatttcttatctagtttaagttgtttt |
49918832 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgcactgtaatgttgtgttaaaattggaattttgtttcta |
182 |
Q |
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| T |
49918831 |
atgagaaataatgagctttcaataagtgcactgtaatgttgtgttaaaattggaattttgtttcta |
49918766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 26530237 - 26530096
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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| T |
26530237 |
caattcatgcatgggctgagatttttgcttatttcaagtgtggctgaagtgaatttaggcttggttattatgttatttcgtatctagtttaagttgtctt |
26530138 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgcactgtaatgttgt |
158 |
Q |
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| T |
26530137 |
atgagaaataatgagcttccaattagtgccctctgatgttgt |
26530096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 36574692 - 36574551
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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| T |
36574692 |
caattcagacatgggttgagatttttacttatttcaaatgtggctgaagtgaatttagggttggttattatgtcatttcttatctagtttaagttgtctt |
36574593 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgcactgtaatgttgt |
158 |
Q |
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| T |
36574592 |
atgagaaataaagagcttccaattagtgccctctcatgttgt |
36574551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 36667120 - 36667249
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||||||| |||||||||| || |
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| T |
36667120 |
caattcaggcatgggttgagatttttgcttatttcaagtgtggttgaagtgaatttaggcttggttattatgttatttcttatctagtttaagttgtctt |
36667219 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgca |
146 |
Q |
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| T |
36667220 |
atgagaaataatgagcttccaattagtgca |
36667249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 31621438 - 31621579
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||||| |||||||||| | || | | ||||||| |||||||||||| |||||||||| || |
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| T |
31621438 |
caattcaggcatgggttgagatttttgcttatttcaaatgtggctgaagtgaatttagggttggttattatgtcatttcttatctagtttaagttgtctt |
31621537 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgcactgtaatgttgt |
158 |
Q |
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| T |
31621538 |
atgagaaataatgagcttccaattagtgccctctcatgttgt |
31621579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 16728478 - 16728337
Alignment:
| Q |
17 |
caattcaagcatggtttgagatttttgcttatttcaagtgtggttgaagtgaatctgggctctgctattatgctatttcttatctattttaagttgtttt |
116 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||||| |||||||||| | | | | ||||||| ||||||| |||| |||||||||| || |
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| T |
16728478 |
caattcaggcatgggttgagatttttgcttatttcaaatgtggctgaagtgaatttaaggttggttattatgtcatttcttctctagtttaagttgtctt |
16728379 |
T |
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| Q |
117 |
atgagaaataatgagctttcaataagtgcactgtaatgttgt |
158 |
Q |
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| T |
16728378 |
atgagaaataatgagctttcaattagtgccctgtcatgttgt |
16728337 |
T |
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