View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_7 (Length: 579)

Name: NF7987_low_7
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_7
NF7987_low_7
[»] chr5 (6 HSPs)
chr5 (1-579)||(41722759-41723338)
chr5 (1-458)||(41718154-41718612)
chr5 (1-224)||(34352226-34352450)
chr5 (1-224)||(34359934-34360158)
chr5 (1-224)||(29585415-29585640)
chr5 (450-579)||(34359538-34359667)
[»] chr4 (14 HSPs)
chr4 (1-292)||(48701936-48702228)
chr4 (1-292)||(48697247-48697539)
chr4 (1-222)||(42265883-42266105)
chr4 (1-222)||(42270602-42270824)
chr4 (1-223)||(24520140-24520363)
chr4 (2-292)||(30945592-30945901)
chr4 (1-292)||(30950297-30950607)
chr4 (451-579)||(48697661-48697789)
chr4 (441-579)||(42270252-42270390)
chr4 (451-579)||(30946023-30946151)
chr4 (3-169)||(10427323-10427480)
chr4 (17-94)||(48782850-48782925)
chr4 (10-151)||(1979240-1979375)
chr4 (315-408)||(48781266-48781360)
[»] chr2 (14 HSPs)
chr2 (1-292)||(5198770-5199062)
chr2 (449-579)||(829828-829958)
chr2 (1-169)||(15602911-15603079)
chr2 (10-154)||(28715815-28715955)
chr2 (449-571)||(28715428-28715550)
chr2 (448-568)||(13840763-13840887)
chr2 (6-165)||(30397029-30397179)
chr2 (1-49)||(825632-825680)
chr2 (99-178)||(830209-830291)
chr2 (15-108)||(8004167-8004259)
chr2 (13-106)||(13843921-13844014)
chr2 (1-49)||(830288-830336)
chr2 (99-178)||(825553-825635)
chr2 (39-108)||(13840387-13840456)
[»] chr6 (16 HSPs)
chr6 (1-222)||(27874105-27874327)
chr6 (5-224)||(26976250-26976470)
chr6 (1-223)||(1234680-1234903)
chr6 (1-292)||(27878824-27879134)
chr6 (438-579)||(26976720-26976861)
chr6 (441-579)||(27874539-27874677)
chr6 (1-151)||(30986563-30986710)
chr6 (2-168)||(30966689-30966853)
chr6 (453-571)||(18967425-18967543)
chr6 (1-169)||(18967920-18968079)
chr6 (450-566)||(21966493-21966604)
chr6 (5-77)||(21966677-21966749)
chr6 (450-510)||(30968569-30968629)
chr6 (119-179)||(6174273-6174333)
chr6 (448-485)||(1472341-1472378)
chr6 (6-54)||(23012619-23012667)
[»] chr3 (11 HSPs)
chr3 (1-224)||(5818628-5818852)
chr3 (1-223)||(5823390-5823613)
chr3 (1-292)||(2817377-2817658)
chr3 (1-178)||(54545906-54546086)
chr3 (441-579)||(54545494-54545632)
chr3 (438-579)||(5819102-5819243)
chr3 (39-169)||(24671173-24671293)
chr3 (23-81)||(35977103-35977161)
chr3 (52-169)||(4579134-4579241)
chr3 (448-485)||(42589352-42589389)
chr3 (7-72)||(31204887-31204950)
[»] chr8 (4 HSPs)
chr8 (1-223)||(9439487-9439710)
chr8 (1-223)||(9444207-9444430)
chr8 (441-579)||(9439921-9440059)
chr8 (448-485)||(24594367-24594404)
[»] chr7 (7 HSPs)
chr7 (1-169)||(16183746-16183905)
chr7 (1-177)||(30235043-30235224)
chr7 (453-566)||(2323956-2324069)
chr7 (1-72)||(8138574-8138645)
chr7 (5-108)||(8140082-8140183)
chr7 (446-570)||(22510276-22510398)
chr7 (448-485)||(7504639-7504676)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-169)||(27341-27500)
scaffold0074 (453-571)||(27877-27995)
[»] chr1 (5 HSPs)
chr1 (1-169)||(46191274-46191433)
chr1 (1-72)||(30697229-30697300)
chr1 (1-72)||(4130215-4130287)
chr1 (451-552)||(41413422-41413523)
chr1 (28-108)||(30674787-30674865)


Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 41723338 - 41722759
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  41723338 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 41723239  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41723238 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 41723139  T
Q  200 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723138 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccata 41723039  T
Q  300 gataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgcc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41723038 gataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgcc 41722939  T
Q  400 atgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722938 atgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctc 41722839  T
Q  500 tctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41722838 tctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatc 41722759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 41718612 - 41718154
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  41718612 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 41718513  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41718512 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 41718413  T
Q  200 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718412 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccata 41718313  T
Q  300 gataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgcc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41718312 gataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgcc 41718213  T
Q  400 atgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718212 atgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34352450 - 34352226
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34352450 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 34352351  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  34352350 gagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 34352251  T
Q  200 ttgtgttgttactgatttgggatga 224  Q
    |||||||||||||||||||||||||    
T  34352250 ttgtgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34360158 - 34359934
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34360158 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 34360059  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  34360058 gagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttc 34359959  T
Q  200 ttgtgttgttactgatttgggatga 224  Q
    |||||||||||||||||||||||||    
T  34359958 ttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29585415 - 29585640
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29585415 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaatag 29585514  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tctaaacaagctttacttgtt 198  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  29585515 gagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaagctttacttgtt 29585614  T
Q  199 cttgtgttgttactgatttgggatga 224  Q
     |||||||||||||||||||||||||    
T  29585615 gttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 450 - 579
Target Start/End: Complemental strand, 34359667 - 34359538
Alignment:
Q  450 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 549  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  550 cgacaccatacaaacttatcagtgttgatc 579  Q
    |||||||||| |||||| |||| |||||||    
T  34359567 cgacaccatataaacttgtcagcgttgatc 34359538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 48701936 - 48702228
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  48701936 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 48702035  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48702036 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 48702135  T
Q  200 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  48702136 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 48697247 - 48697539
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  48697247 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 48697346  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48697347 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 48697446  T
Q  200 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 292  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  48697447 ttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42266105 - 42265883
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266105 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 42266006  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42266005 gagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 42265906  T
Q  200 ttgtgttgttactgatttgggat 222  Q
    |||||||||||||||||||||||    
T  42265905 ttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42270824 - 42270602
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270824 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 42270725  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42270724 gagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 42270625  T
Q  200 ttgtgttgttactgatttgggat 222  Q
    |||||||||||||||||||||||    
T  42270624 ttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24520140 - 24520363
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24520140 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 24520239  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24520240 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 24520339  T
Q  200 ttgtgttgttactgatttgggatg 223  Q
    ||||||||||||||||||||||||    
T  24520340 ttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 30945592 - 30945901
Alignment:
Q  2 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945592 cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 30945691  T
Q  102 agaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta-----aacaa------ 186  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||     |||||          
T  30945692 agaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagtt 30945791  T
Q  187 ---gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccat 282  Q
       |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| ||||||     
T  30945792 gttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa 30945891  T
Q  283 tttcatttat 292  Q
    || |||||||    
T  30945892 ttgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 30950297 - 30950607
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30950297 ccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaatag 30950396  T
Q  101 gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta-----aacaa----- 186  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||     |||||         
T  30950397 gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagt 30950496  T
Q  187 ----gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaacca 281  Q
        |  |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| ||||||    
T  30950497 tgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaacca 30950596  T
Q  282 ttttcatttat 292  Q
     || |||||||    
T  30950597 attgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 451 - 579
Target Start/End: Original strand, 48697661 - 48697789
Alignment:
Q  451 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 550  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  551 gacaccatacaaacttatcagtgttgatc 579  Q
    ||||||||||||||||||||| |||||||    
T  48697761 gacaccatacaaacttatcagcgttgatc 48697789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 441 - 579
Target Start/End: Complemental strand, 42270390 - 42270252
Alignment:
Q  441 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  541 tacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    ||| | ||||||||||||| |||||| ||||||||||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatc 42270252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 451 - 579
Target Start/End: Original strand, 30946023 - 30946151
Alignment:
Q  451 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 550  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  551 gacaccatacaaacttatcagtgttgatc 579  Q
    ||||||||||||||||||||| |||||||    
T  30946123 gacaccatacaaacttatcagcgttgatc 30946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 10427480 - 10427323
Alignment:
Q  3 acggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 101  Q
    |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||    
T  10427480 acggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaatagg 10427383  T
Q  102 agaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    ||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10427382 agaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 10427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 48782925 - 48782850
Alignment:
Q  17 gagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 94  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782925 gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 1979375 - 1979240
Alignment:
Q  10 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 109  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  110 aactaacacaaactaggagaaacctcacaggagaaactattt 151  Q
     |||| ||| ||| |||||||||||||||   ||||||||||    
T  1979280 -actagcactaaccaggagaaacctcacatttgaaactattt 1979240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 408
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
Q  315 gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa 408  Q
    ||||||||||||||||||| ||| |  ||||| ||||| | |||| ||||| |||||  ||||||| ||||||||  | |||||||||||||||||    
T  48781360 gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa 48781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5198770 - 5199062
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  5198770 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 5198869  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5198870 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 5198969  T
Q  200 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  5198970 ttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 449 - 579
Target Start/End: Complemental strand, 829958 - 829828
Alignment:
Q  449 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 548  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  549 tcgacaccatacaaacttatcagtgttgatc 579  Q
    ||||||||||| |||||| ||||||||||||    
T  829858 tcgacaccatataaacttgtcagtgttgatc 829828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 15603079 - 15602911
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| |||||||    
T  15603079 ccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaatag 15602980  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    |||||||| |||||||||  |||| ||||||||||| || | || ||| |||| || ||||||||||||    
T  15602979 gagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttc 15602911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 28715955 - 28715815
Alignment:
Q  10 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 109  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |||||||||||||||       
T  28715955 aagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat--- 28715859  T
Q  110 aactaacacaaactaggagaaacctcacaggagaaactatttttc 154  Q
     |||||||| | ||||||||||||| ||| |||||||||||||||    
T  28715858 -actaacactacctaggagaaaccttacaagagaaactatttttc 28715815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 571
Target Start/End: Complemental strand, 28715550 - 28715428
Alignment:
Q  449 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 548  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  549 tcgacaccatacaaacttatcag 571  Q
    ||||||| ||| |||||| ||||    
T  28715450 tcgacactatagaaacttgtcag 28715428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 448 - 568
Target Start/End: Original strand, 13840763 - 13840887
Alignment:
Q  448 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 544  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  545 -aggatcgacaccatacaaacttat 568  Q
     ||||||||| ||||||||||||||    
T  13840863 caggatcgacgccatacaaacttat 13840887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 30397029 - 30397179
Alignment:
Q  6 gggcaagagtagagaacttt-cactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 104  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| | ||  ||||||||||    
T  30397029 gggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-gaaataggaga 30397126  T
Q  105 atacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatt 165  Q
    |||  |||        ||||||||||| ||||||||||||||||| |||||||||||||||    
T  30397127 atattaac--------actaggagaaatctcacaggagaaactatatttcctctctatatt 30397179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 825680 - 825632
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825680 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
Q  99 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 178  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 830209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 8004259 - 8004167
Alignment:
Q  15 tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 108  Q
    |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||| ||||||||||||||||||||||||||    
T  8004259 tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
Q  13 agtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 106  Q
    |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843921 agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 830336 - 830288
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 49  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830336 ccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
Q  99 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 178  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat 825553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 13840387 - 13840456
Alignment:
Q  39 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 108  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840387 aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27874105 - 27874327
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874105 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 27874204  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27874205 gagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 27874304  T
Q  200 ttgtgttgttactgatttgggat 222  Q
    |||||||||||||||||||||||    
T  27874305 ttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 26976250 - 26976470
Alignment:
Q  5 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26976250 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 26976349  T
Q  105 atacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttcttgt 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26976350 atactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttcttgt 26976449  T
Q  204 gttgttactgatttgggatga 224  Q
    |||||||||||||||||||||    
T  26976450 gttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1234903 - 1234680
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1234903 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 1234804  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatat-ttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1234803 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 1234704  T
Q  200 ttgtgttgttactgatttgggatg 223  Q
    ||||||||||||||||||||||||    
T  1234703 ttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 27878824 - 27879134
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878824 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 27878923  T
Q  101 gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcacta-tcta-----aacaa----- 186  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||| ||||     |||||         
T  27878924 gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagt 27879023  T
Q  187 ----gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaacca 281  Q
        |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| ||||||    
T  27879024 tgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaacca 27879123  T
Q  282 ttttcatttat 292  Q
     || |||||||    
T  27879124 attgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 438 - 579
Target Start/End: Original strand, 26976720 - 26976861
Alignment:
Q  438 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  538 ccatacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatc 26976861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 441 - 579
Target Start/End: Original strand, 27874539 - 27874677
Alignment:
Q  441 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  541 tacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    ||| | ||||||||||||| |||||| ||||||||||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatc 27874677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 30986710 - 30986563
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  30986710 ccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatag 30986611  T
Q  101 gagaatacaaactaacacaaactaggagaaacctca-caggagaaactattt 151  Q
     |||||    ||| |||| | |||||||||||||||  ||||||||||||||    
T  30986610 aagaat----actgacactacctaggagaaacctcatgaggagaaactattt 30986563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 30966853 - 30966689
Alignment:
Q  2 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatagg 101  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||     
T  30966853 cacggggcaagagtagagaactttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaataga 30966754  T
Q  102 agaatacaaactaacacaaactaggagaaacctcac-aggagaaactattt-ttcctctctatattttt 168  Q
    |||||    ||| |  | | |||||||||||||||| || ||||||||||| || ||||||||||||||    
T  30966753 agaat----actgaggctacctaggagaaacctcacaagtagaaactatttctttctctctatattttt 30966689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 453 - 571
Target Start/End: Complemental strand, 18967543 - 18967425
Alignment:
Q  453 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 552  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  553 caccatacaaacttatcag 571  Q
    ||||||| |||||| ||||    
T  18967443 caccatataaacttgtcag 18967425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 18968079 - 18967920
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 99  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | ||||||| |  |||||    
T  18968079 ccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctctcat-gaaata 18967982  T
Q  100 ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    ||||||||| |||        |||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  18967981 ggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttc 18967920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 566
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  450 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 548  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  549 tcgacaccatacaaactt 566  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 21966749 - 21966677
Alignment:
Q  5 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 77  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966749 ggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 510
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  450 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 510  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 6174273 - 6174333
Alignment:
Q  119 aaactaggagaaacctcacaggagaaactatttttcctctctatatttttctctcactatc 179  Q
    ||||||| |||| ||| | |||||||||||| |||||| ||||||||||||||||||||||    
T  6174273 aaactagaagaatccttataggagaaactatatttcctttctatatttttctctcactatc 6174333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  448 acatgttcacaatctcccacttaaagtcacttttgtga 485  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 23012619 - 23012667
Alignment:
Q  6 gggcaagagtagagaactttcactaagtggaagaaattacaggacctct 54  Q
    |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012619 gggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5818628 - 5818852
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5818628 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 5818727  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5818728 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 5818827  T
Q  200 ttgtgttgttactgatttgggatga 224  Q
    |||||||||||||||||||||||||    
T  5818828 ttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5823390 - 5823613
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5823390 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 5823489  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5823490 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 5823589  T
Q  200 ttgtgttgttactgatttgggatg 223  Q
    ||||||||||||||||||||||||    
T  5823590 ttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2817377 - 2817658
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaat 98  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  2817377 ccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaat 2817476  T
Q  99 aggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcacta-tctaaacaagctttacttg 196  Q
    |||||||||| |||||| |||||||              |||||||||||||||||||||||||| ||||||||||| ||  ||||||||| ||||||||    
T  2817477 aggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttacttg 2817562  T
Q  197 ttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  | || ||||||||| |||||| || |||||||    
T  2817563 ttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttat 2817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 54546086 - 54545906
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54546086 ccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaatag 54545987  T
Q  101 gagaatacaa--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttt-ctctcactat 178  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  54545986 gagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 54545906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 441 - 579
Target Start/End: Complemental strand, 54545632 - 54545494
Alignment:
Q  441 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  541 tacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatc 54545494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 438 - 579
Target Start/End: Original strand, 5819102 - 5819243
Alignment:
Q  438 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 537  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  538 ccatacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    |||||||||||||||| ||||| |||||| ||||||||||||    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatc 5819243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 24671173 - 24671293
Alignment:
Q  39 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 138  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  139 ggagaaactatttttcctctctatatttttc 169  Q
    ||||||||||| |||||||||||||||||||    
T  24671263 ggagaaactatatttcctctctatatttttc 24671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
Q  23 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 81  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 4579241 - 4579134
Alignment:
Q  52 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactattt 151  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||| |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  152 ttcctctctatatttttc 169  Q
    ||||||||||||||||||    
T  4579151 ttcctctctatatttttc 4579134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 485
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  448 acatgttcacaatctcccacttaaagtcacttttgtga 485  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 31204887 - 31204950
Alignment:
Q  7 ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 72  Q
    ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204887 ggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9439487 - 9439710
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9439487 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 9439586  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9439587 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 9439686  T
Q  200 ttgtgttgttactgatttgggatg 223  Q
    ||||||||||||||||||||||||    
T  9439687 ttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9444207 - 9444430
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9444207 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaatag 9444306  T
Q  101 gagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctata-tttttctctcactatctaaacaagctttacttgttc 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9444307 gagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttacttgttc 9444406  T
Q  200 ttgtgttgttactgatttgggatg 223  Q
    ||||||||||||||||||||||||    
T  9444407 ttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 441 - 579
Target Start/End: Original strand, 9439921 - 9440059
Alignment:
Q  441 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  541 tacgaggatcgacaccatacaaacttatcagtgttgatc 579  Q
    ||||| ||||||||||||| |||||| ||||||||||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatc 9440059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  448 acatgttcacaatctcccacttaaagtcacttttgtga 485  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 16183746 - 16183905
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| |||||||||  |||||    
T  16183746 ccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt-gaaata 16183843  T
Q  100 ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    ||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16183844 ggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 16183905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 30235224 - 30235043
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattaccactctctcttataaata 99  Q
    |||||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||    
T  30235224 ccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaata 30235125  T
Q  100 ggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactatttttcctctctatattttt-ctctcacta 177  Q
    |||||||||||  |||||||| |  || |||||||||||  ||||||||||| |||| |||||||||||||| |||||||||    
T  30235124 ggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta 30235043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 2323956 - 2324069
Alignment:
Q  453 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 552  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  553 caccatacaaactt 566  Q
    ||||||| ||||||    
T  2324056 caccatataaactt 2324069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8138574 - 8138645
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 72  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138574 ccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 8140082 - 8140183
Alignment:
Q  5 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 104  Q
    |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||| |||||||||  ||||||||||    
T  8140082 ggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-gaaataggaga 8140179  T
Q  105 atac 108  Q
    ||||    
T  8140180 atac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 570
Target Start/End: Complemental strand, 22510398 - 22510276
Alignment:
Q  446 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 545  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  546 ggatcgacaccatacaaacttatca 570  Q
    |||| ||||||||| ||||||||||    
T  22510300 ggattgacaccatataaacttatca 22510276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 485
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  448 acatgttcacaatctcccacttaaagtcacttttgtga 485  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 27341 - 27500
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||| ||||||||  |||||    
T  27341 ccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctctctt-gaaata 27438  T
Q  100 ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    || |||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27439 ggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 27500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 453 - 571
Target Start/End: Original strand, 27877 - 27995
Alignment:
Q  453 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 552  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  553 caccatacaaacttatcag 571  Q
    ||||||| |||||| ||||    
T  27977 caccatataaacttgtcag 27995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 46191433 - 46191274
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata 99  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |||||||||  |||||    
T  46191433 ccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctctt-gaaata 46191336  T
Q  100 ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatatttttc 169  Q
    ||||||||| |||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46191335 ggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttc 46191274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30697229 - 30697300
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 72  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697229 ccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4130287 - 4130215
Alignment:
Q  1 ccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 72  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130287 ccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  451 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 550  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  551 ga 552  Q
    ||    
T  41413522 ga 41413523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  28 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 108  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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