View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_8 (Length: 557)

Name: NF7987_low_8
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_8
NF7987_low_8
[»] chr6 (10 HSPs)
chr6 (24-140)||(26976129-26976245)
chr6 (26-140)||(1234904-1235018)
chr6 (26-140)||(27878709-27878823)
chr6 (26-140)||(18968080-18968194)
chr6 (25-140)||(27873989-27874104)
chr6 (26-132)||(30986721-30986829)
chr6 (72-133)||(30966863-30966923)
chr6 (26-77)||(30967674-30967725)
chr6 (31-139)||(21966754-21966860)
chr6 (45-139)||(23012520-23012614)
[»] chr8 (3 HSPs)
chr8 (25-140)||(9439371-9439486)
chr8 (26-140)||(9444092-9444206)
chr8 (43-99)||(4799315-4799371)
[»] chr5 (5 HSPs)
chr5 (26-140)||(41718613-41718727)
chr5 (26-140)||(41723339-41723453)
chr5 (26-140)||(34360159-34360273)
chr5 (26-140)||(29585300-29585414)
chr5 (45-140)||(34352451-34352546)
[»] chr4 (12 HSPs)
chr4 (26-140)||(48701821-48701935)
chr4 (26-140)||(42266106-42266220)
chr4 (26-140)||(42270825-42270939)
chr4 (26-140)||(48697131-48697245)
chr4 (32-140)||(24520031-24520139)
chr4 (26-140)||(10427483-10427597)
chr4 (26-139)||(30945477-30945590)
chr4 (26-139)||(30950183-30950296)
chr4 (39-139)||(48782932-48783031)
chr4 (28-105)||(36615361-36615438)
chr4 (37-105)||(30165900-30165968)
chr4 (92-130)||(1979567-1979604)
[»] chr3 (8 HSPs)
chr3 (26-140)||(5823275-5823389)
chr3 (25-140)||(5818512-5818627)
chr3 (26-139)||(2817263-2817376)
chr3 (34-140)||(4579254-4579360)
chr3 (25-140)||(24659135-24659250)
chr3 (25-140)||(54546087-54546201)
chr3 (40-141)||(31204781-31204880)
chr3 (26-70)||(25877086-25877130)
[»] chr2 (11 HSPs)
chr2 (26-140)||(825682-825796)
chr2 (26-140)||(830338-830452)
chr2 (35-140)||(5198664-5198769)
chr2 (37-140)||(15603080-15603183)
chr2 (35-141)||(30396920-30397024)
chr2 (33-139)||(28715965-28716070)
chr2 (25-131)||(31592909-31593015)
chr2 (46-139)||(12175768-12175860)
chr2 (25-97)||(13840239-13840311)
chr2 (95-139)||(13843865-13843908)
chr2 (41-90)||(9358158-9358207)
[»] chr7 (6 HSPs)
chr7 (31-140)||(16183636-16183745)
chr7 (26-140)||(8139964-8140077)
chr7 (24-140)||(30235226-30235341)
chr7 (26-140)||(8138460-8138573)
chr7 (26-132)||(36528415-36528520)
chr7 (39-139)||(5102606-5102705)
[»] scaffold0074 (1 HSPs)
scaffold0074 (26-140)||(27226-27340)
[»] chr1 (3 HSPs)
chr1 (26-140)||(46191434-46191546)
chr1 (31-139)||(30697120-30697227)
chr1 (24-140)||(4130288-4130403)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 26976129 - 26976245
Alignment:
Q  24 aatgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976129 aatgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 26976228  T
Q  124 caaataaggggaaaaaa 140  Q
    |||||||||||||||||    
T  26976229 caaataaggggaaaaaa 26976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 1235018 - 1234904
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  1234918 aataaggggaaaaaa 1234904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 27878709 - 27878823
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878709 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27878808  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  27878809 aataaggggaaaaaa 27878823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 18968194 - 18968080
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  18968094 aataaggggaaaaaa 18968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 27873989 - 27874104
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873989 atgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 27874088  T
Q  125 aaataaggggaaaaaa 140  Q
    |||||| |||||||||    
T  27874089 aaataaagggaaaaaa 27874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 30986829 - 30986721
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctca 122  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||   ||||||||    
T  30986829 tgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctca 30986731  T
Q  123 acaaataagg 132  Q
    ||||||||||    
T  30986730 acaaataagg 30986721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 30966923 - 30966863
Alignment:
Q  72 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 133  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaata-tttacgtggaaacccatcaacaaataaggg 30966863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 30967725 - 30967674
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacga 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30967725 tgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 21966860 - 21966754
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  131 ggggaaaaa 139  Q
     ||||||||    
T  21966762 agggaaaaa 21966754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 23012520 - 23012614
Alignment:
Q  45 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 139  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | |||  || ||||||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtcacaaattaaggggaaaaa 23012614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 9439371 - 9439486
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439371 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 9439470  T
Q  125 aaataaggggaaaaaa 140  Q
    ||||||||||||||||    
T  9439471 aaataaggggaaaaaa 9439486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 9444092 - 9444206
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444092 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9444191  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  9444192 aataaggggaaaaaa 9444206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  43 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 99  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 41718727 - 41718613
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718727 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41718628  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  41718627 aataaggggaaaaaa 41718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 41723453 - 41723339
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  41723353 aataaggggaaaaaa 41723339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 34360273 - 34360159
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  34360173 aataaggggaaaaaa 34360159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 29585300 - 29585414
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  29585400 aataaggggaaaaaa 29585414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 34352546 - 34352451
Alignment:
Q  45 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 34352451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 48701821 - 48701935
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701821 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48701920  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  48701921 aataaggggaaaaaa 48701935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 42266220 - 42266106
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266220 tgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 42266121  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  42266120 aataaggggaaaaaa 42266106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 42270939 - 42270825
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270939 tgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 42270840  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  42270839 aataaggggaaaaaa 42270825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 48697131 - 48697245
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  48697231 aataaggggaaaaaa 48697245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 24520031 - 24520139
Alignment:
Q  32 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  132 gggaaaaaa 140  Q
    |||||||||    
T  24520131 gggaaaaaa 24520139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 10427597 - 10427483
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  10427497 aataaggggaaaaaa 10427483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 30945477 - 30945590
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945477 tgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 30945576  T
Q  126 aataaggggaaaaa 139  Q
    |||||||| |||||    
T  30945577 aataagggaaaaaa 30945590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 30950183 - 30950296
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950183 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 30950282  T
Q  126 aataaggggaaaaa 139  Q
    |||||||| |||||    
T  30950283 aataagggaaaaaa 30950296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 48783031 - 48782932
Alignment:
Q  39 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 138  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  28 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 105  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  37 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 105  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  92 aacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 5823275 - 5823389
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823275 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 5823374  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  5823375 aataaggggaaaaaa 5823389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 5818512 - 5818627
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818512 atgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 5818611  T
Q  125 aaataaggggaaaaaa 140  Q
     |||||||||||||||    
T  5818612 taataaggggaaaaaa 5818627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 2817263 - 2817376
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817263 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 2817362  T
Q  126 aataaggggaaaaa 139  Q
    |||||||| |||||    
T  2817363 aataagggaaaaaa 2817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  34 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 133  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  134 gaaaaaa 140  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 24659135 - 24659250
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24659135 atgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaac 24659234  T
Q  125 aaataaggggaaaaaa 140  Q
    ||||||||||||||||    
T  24659235 aaataaggggaaaaaa 24659250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 54546201 - 54546087
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  54546201 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaata-tttacgtggaaacccctcaac 54546103  T
Q  125 aaataaggggaaaaaa 140  Q
    ||||||||||||||||    
T  54546102 aaataaggggaaaaaa 54546087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 31204781 - 31204880
Alignment:
Q  40 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 139  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 25877130 - 25877086
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataa 70  Q
    |||||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877130 tgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 825796 - 825682
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  825796 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaaca 825697  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  825696 aataaggggaaaaaa 825682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 830452 - 830338
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  830352 aataaggggaaaaaa 830338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 5198664 - 5198769
Alignment:
Q  35 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  135 aaaaaa 140  Q
    ||||||    
T  5198764 aaaaaa 5198769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 15603183 - 15603080
Alignment:
Q  37 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 136  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603183 agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 15603084  T
Q  137 aaaa 140  Q
    ||||    
T  15603083 aaaa 15603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 30396920 - 30397024
Alignment:
Q  35 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  135 aaaaaat 141  Q
    |||||||    
T  30397018 aaaaaat 30397024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 28716070 - 28715965
Alignment:
Q  33 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 132  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctcattaaataagg 28715972  T
Q  133 ggaaaaa 139  Q
    |||||||    
T  28715971 ggaaaaa 28715965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 31592909 - 31593015
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 124  Q
    ||||| |||| || ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | |||||     
T  31592909 atgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaat 31593008  T
Q  125 aaataag 131  Q
    |||||||    
T  31593009 aaataag 31593015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 12175768 - 12175860
Alignment:
Q  46 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 139  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| |||||| || |||||    
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataatggaaaaaa 12175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 13840239 - 13840311
Alignment:
Q  25 atgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacaca 97  Q
    ||||| ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||    
T  13840239 atgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca 13840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 13843865 - 13843908
Alignment:
Q  95 acacaatattttacgtggaaacccctcaacaaataaggggaaaaa 139  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaa 13843908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  41 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 90  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 16183636 - 16183745
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  131 ggggaaaaaa 140  Q
    ||||||||||    
T  16183736 ggggaaaaaa 16183745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 8139964 - 8140077
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  8139964 tgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtggaaacccctcaaca 8140062  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||| ||||    
T  8140063 aataaggggagaaaa 8140077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 30235341 - 30235226
Alignment:
Q  24 aatgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 123  Q
    |||||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30235341 aatgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaa 30235243  T
Q  124 caaataaggggaaaaaa 140  Q
    | |||||||||||||||    
T  30235242 cgaataaggggaaaaaa 30235226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 8138460 - 8138573
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||  ||| |||||||||||| ||||    
T  8138460 tgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaaca 8138558  T
Q  126 aataaggggaaaaaa 140  Q
    || ||||||| ||||    
T  8138559 aacaaggggagaaaa 8138573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 36528415 - 36528520
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||| |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  126 aataagg 132  Q
    |||||||    
T  36528514 aataagg 36528520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 5102606 - 5102705
Alignment:
Q  39 agtaacaaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 137  Q
    ||||||||||||||||||| || ||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataaggggaaa 5102703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 27226 - 27340
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  27326 aataaggggaaaaaa 27340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 46191546 - 46191434
Alignment:
Q  26 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 125  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca 46191449  T
Q  126 aataaggggaaaaaa 140  Q
    |||||||||||||||    
T  46191448 aataaggggaaaaaa 46191434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 30697120 - 30697227
Alignment:
Q  31 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 130  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaataa 30697218  T
Q  131 ggggaaaaa 139  Q
    |||||||||    
T  30697219 ggggaaaaa 30697227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 4130403 - 4130288
Alignment:
Q  24 aatgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 123  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  4130403 aatgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaa 4130305  T
Q  124 caaataaggggaaaaaa 140  Q
    ||||||| |||||||||    
T  4130304 caaataaagggaaaaaa 4130288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University