View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_9 (Length: 512)
Name: NF7987_low_9
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 229 - 495
Target Start/End: Complemental strand, 18318363 - 18318097
Alignment:
| Q |
229 |
ttacaaaacacaactatgaaattgtcaaataatttgtctcttaccctagatatttatattttttattaacaaatattgaatacaatagtataaaaaattc |
328 |
Q |
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| T |
18318363 |
ttacaaaacacaactatgaaattgtcaaataatttgtctcttaccctagatatttatattttttattaacaaatattcaatacaataatataaaaaattc |
18318264 |
T |
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| Q |
329 |
cccagctacaacttgatagatacatatgaaaaatctatgagcaacaaagtatacaaagagaaaacagaaagtaagagaatccaaaatggtaaccataaaa |
428 |
Q |
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| T |
18318263 |
cctagttacaacttgatagatacatatgaaaaatctatgagcaacaaagtatacaaagagaaaacagaaagtaagagaatccaaaatggtaaccataaaa |
18318164 |
T |
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| Q |
429 |
gcttcttacacagtcacaccaaatgaatcaactccaaagggtagtttatggttctcagatttagatc |
495 |
Q |
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| T |
18318163 |
gcttcttacacaatcacaccaaatgaatcaactccaaagggtagtttatggttctcagatttagatc |
18318097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 18318629 - 18318569
Alignment:
| Q |
158 |
actctattgtgacacgagaaatagaactttaacttttctgagaggactacgtaactattga |
218 |
Q |
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| T |
18318629 |
actctattgtgacacgagaaacagaacttgaacttttttgagaggactacgtaactattga |
18318569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 36343791 - 36343851
Alignment:
| Q |
45 |
aaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaattta |
105 |
Q |
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| T |
36343791 |
aaacagttcagttcaattcaaaatgcaaacaatttagttcaattcaattattttaaattta |
36343851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 48660201 - 48660138
Alignment:
| Q |
41 |
tttaaaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaattt |
104 |
Q |
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| T |
48660201 |
tttaaaacagttcgattcaattcgaaatgcaaacaatttgattcaattcaattattttaaattt |
48660138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23689367 - 23689446
Alignment:
| Q |
36 |
ttcaatttaaaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaatttagtcaacaatt |
115 |
Q |
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| T |
23689367 |
ttcagtttaaaatagttcggttcaattcaaaatgcaaacaatttgattcaattcatttattttagatttagcaaacaatt |
23689446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 2259875 - 2259811
Alignment:
| Q |
41 |
tttaaaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaattta |
105 |
Q |
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| T |
2259875 |
tttaaaacagttcggttcaatttaaaatgcaaacagttcgattcggttcaattattttaaattta |
2259811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 27514493 - 27514553
Alignment:
| Q |
45 |
aaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaattta |
105 |
Q |
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| T |
27514493 |
aaacaattcagttcagttcgaaatgcaaacaatttagttcagttcaattatttaaaattta |
27514553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 14108740 - 14108800
Alignment:
| Q |
45 |
aaacaattcagttcaattcaaaatgcaaactatttaattcgattcacttattttaaattta |
105 |
Q |
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||||||||||||| | ||| ||||||||||| || | ||| ||||| |||||||||||||| |
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| T |
14108740 |
aaacaattcagtttagttcgaaatgcaaactgttcagttcaattcaattattttaaattta |
14108800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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