View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7988_low_1 (Length: 637)
Name: NF7988_low_1
Description: NF7988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7988_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 273859 - 273309
Alignment:
| Q |
18 |
aatacaaacaca--cactcaatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatggc |
115 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273859 |
aatacaaacacaaacactttatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatggc |
273760 |
T |
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| Q |
116 |
aacaccaacaaca------gtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatcat |
209 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273759 |
aacaacaacaacaacaacagtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatcat |
273660 |
T |
|
| Q |
210 |
cttcttgtctcctcttgggacaaaactgttcgtctttatgatgcaaccgcagatgttcttagaggtgagttccttcacggcggacctgttcttgactgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273659 |
cttcttgtctcctcttgggacaaaactgttcgtctttatgatgcaaccgcagattttcttagaggtgagttccttcacggcggacctgttcttgactgtt |
273560 |
T |
|
| Q |
310 |
gctttcatgatgactcttctggtttcagtgcctccgccgataacactgtcagacggtcagnnnnnnnnnnnnnnnnnnnnnncacctttccattttctca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
273559 |
gctttcatgatgactcttctggtttcagtgcctccgccgataacactgtcagacggtcag----ttacttacttacttacttcacctttccattttctca |
273464 |
T |
|
| Q |
410 |
ccagatccattcttagttctcatttctcttttcaattactttttatagcctcattttcgctaccggtaaagaggatattttgggaaagcatgatgctcct |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273463 |
ccagatccattcttagttctcatttctcttttcaattactttttatagcctcattttcgctaccggtaaagaggatattttgggaaagcatgatgctcct |
273364 |
T |
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| Q |
510 |
gttcgttgtgttgagtactcctacgccgcaggttacttactcttttcaatataat |
564 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
273363 |
gttcgttgtgttgagtactcttacgccgcaggttacttactcttttcaatataat |
273309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 273312 - 273271
Alignment:
| Q |
587 |
taattcaaatgggtactactagttactataacttcatctcac |
628 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
273312 |
taattcaaatgggtactactagttactataacttcatttcac |
273271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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