View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7988_low_2 (Length: 474)
Name: NF7988_low_2
Description: NF7988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7988_low_2 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Complemental strand, 22621908 - 22621453
Alignment:
| Q |
10 |
agcatagaaaggtaagatattgttcgttactgtaaatagcagcagcttgtatttgtgcctcatggtattagttagttctagttaattcagttacaaagtg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621908 |
agcatagaaaggtaagatattgttcgttactgtaaatagcagcagcttgtatttgtgcctcatggtattagttagttctagttaattcagttacaaagtg |
22621809 |
T |
|
| Q |
110 |
ccactttagcattggcagttataactgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtt |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621808 |
ccactttagcattggcagttataattgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtt |
22621709 |
T |
|
| Q |
210 |
tctaaatgtatgatattaaaacatgatagtgatttttgatgaagaacataaaatttgattagtaggcatag----nnnnnnnnnnncagatctgaaatct |
305 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22621708 |
tctaaatgtatgatattaaaacatgatagcgaattttgatgaagaacataaaatttgattagcaggcatagtttttttttttttttcagatctgaaatct |
22621609 |
T |
|
| Q |
306 |
tatttccttcatatttcctgatgcattaaaatatgatagcgatttttctgtttctaaatgtatgatatatttttcaggtcatgaaagtgaagttaattta |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22621608 |
tatttccttcatatttcctgatgcattaaaatatgatagcgatttttctatttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaattta |
22621509 |
T |
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| Q |
406 |
ggaggaggttttagggatctttcaaaacttccaacgttgtttcagaggtagttatt |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621508 |
ggaggaggttttagggatctttcaaaacttccaacgttgtttcagaggtagttatt |
22621453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 114 - 461
Target Start/End: Complemental strand, 19023594 - 19023250
Alignment:
| Q |
114 |
tttagcattggcagttataactgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtttcta |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||| |||||| |||| || |||||||||| |
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| T |
19023594 |
tttagcattggcagttataactgtgtgtgttagttagcttttgttgtaagttaaacccca-ctgagtgaaggtcagactattcgcaaacgttggtttcta |
19023496 |
T |
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| Q |
214 |
aatgtatgatattaaaacatgatagtgatttttgatgaagaacataaaatttgattagtaggcatagnnnnnnnnnnncagatctgaaatcttatttcct |
313 |
Q |
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| ||| |||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||| |
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| T |
19023495 |
agtgtgtgatattaaatcatgatagcgatttttgatgaagaacataaaatctgattggtaggcat--gttttctttttcagatcggaaatcttatttcct |
19023398 |
T |
|
| Q |
314 |
tcatatttcctgatgcattaaaatatgatagcgatttttctgtttctaaatgtatgatatatttttcaggtcatgaaagtgaagttaatttaggaggagg |
413 |
Q |
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||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
19023397 |
tcaaattttctgatgcattaaaatatgatagcaatttttctgtttctaaatgtatgatatctttttcaggttatgaaagtgaagttaatttaggaggagg |
19023298 |
T |
|
| Q |
414 |
ttttagggatctttcaaaacttccaacgttgtttcagaggtagttatt |
461 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
19023297 |
ttttagggatctttcaaaacttccaacgctgtttcaaaggtagttatt |
19023250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 151 - 461
Target Start/End: Complemental strand, 22067456 - 22067149
Alignment:
| Q |
151 |
cttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtttctaaatgtatgatattaaaacatgatagtgatttttgatg |
250 |
Q |
| |
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|||||| |||||||||||||||| ||||| |||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
22067456 |
cttttgttgtaagttaaacccca-ctgagtgaaggtcagactatacgcaaatgttggtttctaagtgtatgatattaaaacatgatagcgatttttgatg |
22067358 |
T |
|
| Q |
251 |
aagaacataaaatttgattagtaggcatagnnnnnnnnnnncagatctgaaatcttatttccttcatatttcctgatgcattaaaatatgatagcgattt |
350 |
Q |
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||||||||||||| ||||| |||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||| |
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| T |
22067357 |
aagaacataaaatctgattggtaggcat--gttttctttttcagatcggaaatcttatttccttcaaattttctgatgcattaaaatatgatagcaatta |
22067260 |
T |
|
| Q |
351 |
ttctgtttctaaatgtatgatatatttttcaggtcatgaaagtgaagttaatttaggaggaggttttagggatctttcaaaacttccaacgttgtttcag |
450 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22067259 |
ttctgtttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggttttagggatctttcaaaacttccaacgctgtttcag |
22067160 |
T |
|
| Q |
451 |
aggtagttatt |
461 |
Q |
| |
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||||||||||| |
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| T |
22067159 |
aggtagttatt |
22067149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 124 - 461
Target Start/End: Complemental strand, 4487983 - 4487649
Alignment:
| Q |
124 |
gcagttataactgtgtgtgttagttaacttttggtgtaagttaaaccccaactgagagaaggtgtgactatacgcagactttggtttctaaatgtatgat |
223 |
Q |
| |
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|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
4487983 |
gcagttataactgtgtgtgttagttagcttttgttgtaagttaaaccccg-ctgagtgaaggtgtgactatacgcaaacgttggtttctaagtgtatgat |
4487885 |
T |
|
| Q |
224 |
attaaaacatgatagtgatttttgatgaagaacataaaatttgattagtaggcatagnnnnnnnnnnncagatctgaaatcttatttccttcatatttcc |
323 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||| ||||| ||||||||||| |||| | |
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| T |
4487884 |
attaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcata--ttttctttctcagatcgaaaatcgtatttccttcaaattttc |
4487787 |
T |
|
| Q |
324 |
tgatgcattaaaatatgatagcgatttttctgtttctaaatgtatgatatatttttcaggtcatgaaagtgaagttaatttaggaggaggttttagggat |
423 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487786 |
tgatgcattaaaatatgatagcaatttttttgtttttaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggttttagggat |
4487687 |
T |
|
| Q |
424 |
ctttcaaaacttccaacgttgtttcagaggtagttatt |
461 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| |
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| T |
4487686 |
ctttcaaaacttccaacgctatttcagaggtagttatt |
4487649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 32091390 - 32091498
Alignment:
| Q |
302 |
atcttatttccttcatatttcctgatgcattaaaatatgatagcgatttttctgtttctaaatgtatgatatatttttcaggtcatgaaagtgaagttaa |
401 |
Q |
| |
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||||||||||||| || |||||||| ||||||||||| ||| ||||||| | | ||||||||||||| ||||| ||||||||||||| ||||| | |
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| T |
32091390 |
atcttatttcctttcaatgtcctgatgaattaaaatatgctagtgattttttttatgctaaatgtatgatggctttttaaggtcatgaaagtaaagttta |
32091489 |
T |
|
| Q |
402 |
tttaggagg |
410 |
Q |
| |
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||| ||||| |
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|
| T |
32091490 |
tttgggagg |
32091498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 412
Target Start/End: Complemental strand, 43255134 - 43255101
Alignment:
| Q |
379 |
tcaggtcatgaaagtgaagttaatttaggaggag |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
43255134 |
tcaggtcatgaaagtgaagttaatttaggaggag |
43255101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 13246 - 13282
Alignment:
| Q |
243 |
ttttgatgaagaacataaaatttgattagtaggcata |
279 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
13246 |
ttttgatgaagaacataaaatctgattggtaggcata |
13282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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