View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7988_low_3 (Length: 414)
Name: NF7988_low_3
Description: NF7988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7988_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 49 - 402
Target Start/End: Original strand, 834603 - 834961
Alignment:
| Q |
49 |
aaaggagcatatccgttat---tctgaaattcaatgcaaaaaagattttaccttcattgaaagaatcaatgggagagacataaatttgctgcagggtctt |
145 |
Q |
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| T |
834603 |
aaaggagcatatccgttataattctgaaattcaatgcaaaaaagattttaccttcattgaaagaatcaatgggagagacataaatttgctgcagggtctt |
834702 |
T |
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| Q |
146 |
gaacttcacaccggtgtattcaatgctacggagcaggatgaaattgttaagtatatatacagattgcaaaggagaggacaacaaggaagacttagaggta |
245 |
Q |
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| T |
834703 |
gaacttcacaccgatgttttcaatgctacggagcaggatgaaattgtcgagtatatatacggattgcaaaggagaggacaacaaggaagacttagaggta |
834802 |
T |
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| Q |
246 |
tatac-----aaagcttcttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttagcatatactattattttgttt |
340 |
Q |
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| T |
834803 |
tatacaaattaaagcttcttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttagcatatac---tattttgttt |
834899 |
T |
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| Q |
341 |
atcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacttatttgtatatt |
402 |
Q |
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| T |
834900 |
atcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacctttttgtatatt |
834961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 105 - 381
Target Start/End: Original strand, 812973 - 813244
Alignment:
| Q |
105 |
aaagaatcaatgggagagacataaatttgctgcagggtcttgaacttcacaccggtgtattcaatgctacggagcaggatgaaattgttaagtatatata |
204 |
Q |
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| T |
812973 |
aaaggatcaacggaagagatataaatttgttagagggtcttgaacttcacagcagtgtcttcaatgctacggagcagaatgaaattgttgactatatata |
813072 |
T |
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| Q |
205 |
cagattgcaaaggagaggacaacaaggaagacttagaggtatatacaaagcttcttaatttctccttttattcttcaattcaatcacattccctttgatt |
304 |
Q |
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| T |
813073 |
catattgcaacggagaggacaacaaggaagactgagaggtatatgcaaaacttcctatcttctc--tttattcttcaattcaatcacaattcctttggtt |
813170 |
T |
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| Q |
305 |
tatttgtcaactttagcatatactattattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttct |
381 |
Q |
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| T |
813171 |
tatttgttaacttcaacatatac---ttttttgtttttcattagttcatatttgtactcatgtttgttgcaccttct |
813244 |
T |
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