View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7988_low_4 (Length: 364)
Name: NF7988_low_4
Description: NF7988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7988_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 35272720 - 35272444
Alignment:
| Q |
20 |
tgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagttaataat |
119 |
Q |
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| T |
35272720 |
tgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagttaataat |
35272621 |
T |
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| Q |
120 |
ggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagtaatgtcagttctaa |
219 |
Q |
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| T |
35272620 |
ggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagtaatgtcagttctaa |
35272521 |
T |
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| Q |
220 |
aattattcatgtctgnnnnnnnnnnnnnnnnctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
297 |
Q |
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| T |
35272520 |
aatcattcatgtctg-tttttttagttttttctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
35272444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 35254657 - 35254563
Alignment:
| Q |
20 |
tgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
114 |
Q |
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| T |
35254657 |
tgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatgaagctcatgtta |
35254563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 35248159 - 35248066
Alignment:
| Q |
20 |
tgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtt |
113 |
Q |
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| T |
35248159 |
tgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatgaagctcgagtt |
35248066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 35279324 - 35279272
Alignment:
| Q |
21 |
gttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggatt |
73 |
Q |
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| T |
35279324 |
gttctgtgtagttttgatatctttattcatgattacttcaagaagagaggatt |
35279272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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