View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7989_high_1 (Length: 768)

Name: NF7989_high_1
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7989_high_1
NF7989_high_1
[»] chr3 (5 HSPs)
chr3 (198-484)||(14993103-14993386)
chr3 (27-149)||(14993385-14993506)
chr3 (582-683)||(14992994-14993093)
chr3 (703-752)||(14992640-14992689)
chr3 (37-128)||(27741739-27741822)
[»] chr4 (2 HSPs)
chr4 (37-127)||(19657781-19657871)
chr4 (131-184)||(37320737-37320790)
[»] chr6 (2 HSPs)
chr6 (131-184)||(15150233-15150286)
chr6 (141-184)||(22577323-22577366)
[»] chr8 (1 HSPs)
chr8 (140-184)||(6443344-6443388)
[»] scaffold0009 (1 HSPs)
scaffold0009 (63-131)||(53873-53943)
[»] chr7 (2 HSPs)
chr7 (142-184)||(19289709-19289751)
chr7 (143-184)||(3959121-3959162)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 198 - 484
Target Start/End: Complemental strand, 14993386 - 14993103
Alignment:
Q  198 cagggacaatacaatcatcaagagtagaaccttaatggttgtgttaatgcaaaaattagtgaaaatttgattttagggaaaaggaaagattgtcagattg 297  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  14993386 caggggcaatacaatcatcaagagtagaaccttaatggttgtgttaatgcaaaaattagtgaaagattgattttagggaaaaggaaagatagtcagattg 14993287  T
Q  298 tgataaaatagcaatttggaaatatgatgatgtttctttgcaaccacttatatagaaggaggcacccgaattcaggtatctatctgttctattaaannnn 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||        
T  14993286 tgataaaatagcaatttggaaatatgatgatgtttctttgcaaccacttctatagaaggaggcgcccgaattcaggtatctatttgttctattaaattgt 14993187  T
Q  398 nnnatattttgttctgactatagaagaaattaaaagaaaaattatctgttacaaatcataaaagtgaggcctgttataaacaacttt 484  Q
       ||||||||||||||||||   | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14993186 tttatattttgttctgactat---aaaaattaaaagaaaaaatatctgttacaaatcataaaagtgaggcctgttataaacaacttt 14993103  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 14993506 - 14993385
Alignment:
Q  27 tttggtgttaagtttgcttttggttgttaggtggcagtttcccgtaggtttttagattttgttttgatgcacgggtgtgtgggtttagaattggatgctc 126  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  14993506 tttggtgttaagtttgcttttgattgttaggtggc-gtttcccgtaggtttttagattttgttttgatgcacgggtgtatgggtttaaaattggatgctc 14993408  T
Q  127 cccatacgaatcttagcctagca 149  Q
    |||||||||||||||||||||||    
T  14993407 cccatacgaatcttagcctagca 14993385  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 582 - 683
Target Start/End: Complemental strand, 14993093 - 14992994
Alignment:
Q  582 attgaaattgtaggagaccctttcattaaaggttggtgatttgtttattctctacgaatagcgtagctcaataaataaacacattgagcataatatatgt 681  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14993093 attgaaattgtaggagaccctttcattaaaggttgatgatttgtttattctctacgaatagcgtagctcaataaataa--acattgagcataatatatgt 14992996  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 703 - 752
Target Start/End: Complemental strand, 14992689 - 14992640
Alignment:
Q  703 caaaagaaaatgtactaatagtttctttgaacggaaagatatgttgatta 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14992689 caaaagaaaatgtactaatagtttctttgaacggaaagatatgttgatta 14992640  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 27741739 - 27741822
Alignment:
Q  37 agtttgcttttggttgttaggtggcagtttcccgtagg-tttttagattttgttttgatgcacgggtgtgtgggtttagaattggatgctccc 128  Q
    |||||| |||||||||||||||||  |||||| ||||| ||||||| |||||||||||||||        |||||||||||||||||||||||    
T  27741739 agtttgtttttggttgttaggtgg-tgtttcctgtaggctttttagtttttgttttgatgca--------tgggtttagaattggatgctccc 27741822  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 19657871 - 19657781
Alignment:
Q  37 agtttgcttttggttgttaggtggcagtttcccgtaggttttt-agattttgttttgatgcacgggtgtgtgggtttagaattggatgctcc 127  Q
    |||||| |||||||||||||||||  |||||  |||||||||| ||||||| ||||||||||||||||| || ||||| |||||| ||||||    
T  19657871 agtttgtttttggttgttaggtggt-gtttcgtgtaggttttttagattttattttgatgcacgggtgtatgagtttataattgggtgctcc 19657781  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 37320790 - 37320737
Alignment:
Q  131 tacgaatcttagcctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||||||||||||    
T  37320790 tacgattcctagtctagcactccttgtactggttaggactcattgtgattttaa 37320737  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 15150286 - 15150233
Alignment:
Q  131 tacgaatcttagcctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    ||||| || ||||||||||||| |||| |||||||||||| |||||||||||||    
T  15150286 tacgattcctagcctagcactctttgtgctggtcaggacttattgtgattttaa 15150233  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 22577366 - 22577323
Alignment:
Q  141 agcctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||    
T  22577366 agcctagcactccttgtgctggttaggactcattttgattttaa 22577323  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 6443388 - 6443344
Alignment:
Q  140 tagcctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||    
T  6443388 tagcctagcactccttgtgctggttaggattcattgtgattttaa 6443344  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 53943 - 53873
Alignment:
Q  63 gtttcccgtaggtttttaga-ttttgt-tttgatgcacgggtgtgtgggtttagaattggatgctccccat 131  Q
    |||||| |||||||||| || |||||| |||||||||||||||| || ||||| |||||| ||||||||||    
T  53943 gtttcctgtaggttttttgaattttgtctttgatgcacgggtgtatgagtttacaattgggtgctccccat 53873  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 19289751 - 19289709
Alignment:
Q  142 gcctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    |||||||||  ||||| ||||||||||||||||||||||||||    
T  19289751 gcctagcacctcttgtgctggtcaggactcattgtgattttaa 19289709  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 3959121 - 3959162
Alignment:
Q  143 cctagcactccttgtactggtcaggactcattgtgattttaa 184  Q
    ||||||||| ||||| |||||||||| |||||||||||||||    
T  3959121 cctagcacttcttgtgctggtcaggattcattgtgattttaa 3959162  T

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