View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7989_high_7 (Length: 326)
Name: NF7989_high_7
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 8539319 - 8538991
Alignment:
| Q |
1 |
caaaatcgtttaatatttcatgtcgactatcaactttttgtgtcaaaataacattttcaaaagaagnnnnnnnnnctagtcgcattgaagaaggaaaatt |
100 |
Q |
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| T |
8539319 |
caaaatcgtttaatattccatgtcgaccatcaactttttgtgtcaaaataacattttcaaaagaa--aaaaaaaactagtcgcattgaagaaggaaaatt |
8539222 |
T |
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| Q |
101 |
aatggataggacatatcaaattagctatcacttgaaggctttcagttctgataggaagattaaattcattatatataaacaagatacattcacctgtcac |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
8539221 |
aatggataggacatatcacattagctatcacttgaaggctttcagttctgataggaagattaaattcgttttatataaacaagatacattcacctgtcac |
8539122 |
T |
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| Q |
201 |
atatgcacatagctaatgttcatataccacagattcaaaaccaatcagaaaaacagtgctatatcttttccaaagtatgaattt-----aaatcttctgt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8539121 |
atatgcacatagctaatgttcatataccacagattcaaaaccaattagaaaaacagtgctatatcttttccaaagtatgaatttaattcaaatcttctgt |
8539022 |
T |
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| Q |
296 |
acaaacagtttgattcacttgaaacaatggc |
326 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8539021 |
acaaacagtttgattcacttgaaacaatggc |
8538991 |
T |
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