View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7989_high_8 (Length: 318)

Name: NF7989_high_8
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7989_high_8
NF7989_high_8
[»] chr3 (1 HSPs)
chr3 (18-311)||(44531979-44532272)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 44532272 - 44531979
Alignment:
Q  18 ctttttgtataacttaatgttcatggctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacatcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44532272 ctttttgtataacttaatgttcatggctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacattc 44532173  T
Q  118 tcaacatcaagagggtctctcaaccatcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44532172 tcaacatcaagagggtctctcaaccatcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcg 44532073  T
Q  218 agcgcgttcaacatggcattaaccggggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactgaagattcatctca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44532072 agcgcgttcaacatggcattaaccggggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactgaagattcatctca 44531979  T

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