View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7989_low_10 (Length: 273)
Name: NF7989_low_10
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 55952422 - 55952666
Alignment:
| Q |
13 |
aatatttggctagtttcgtagttttctttgggcatttcgccttcttttgtnnnnnnngttaaaataattaatatatagtaatgcgatattattaatatta |
112 |
Q |
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| T |
55952422 |
aatatttggctagtttcttagttttctttgggcatttcgccttcttttgtaaaaaaagttaaaataattaatatatagtaatgcgatattattaatatta |
55952521 |
T |
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| Q |
113 |
atctggcactcagctttnnnnnnnnn---tagtctgccgctactagagctggacatatacatattaataaactggggggcacacaaaatccgacatggtg |
209 |
Q |
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| T |
55952522 |
atctggcactcagctttaaaaaaaaaaaatagtctgccgctactagagctggacatatacatattaataaactagggggcacacaaaatccgacatggtg |
55952621 |
T |
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| Q |
210 |
ctttaagtcatcccaatctataagtttcaggttgagtctcatcca |
254 |
Q |
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| T |
55952622 |
ctttaagtcatcccaatctataagtttcaggttgagtctcatcca |
55952666 |
T |
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