View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7989_low_12 (Length: 242)
Name: NF7989_low_12
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43293300 - 43293065
Alignment:
| Q |
1 |
aggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtgtatgagacaactcacaagtggactaaaaatactgttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293300 |
aggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtgtatgagacaactcacaagtggactaaaaatactgttta |
43293201 |
T |
|
| Q |
101 |
caccatcctgttatgatccggcaaaaatataaacggatttggaaaagaagaaaagaaatatgccaagcatgaatcttattcttgaagatactttaggatt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293200 |
caccatcatgttatgatccggcaaaaatataaacggatttggaaaagaagaaaagaaatatgccaagcatgaatcttattcttgaagatactttaggatt |
43293101 |
T |
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| Q |
201 |
ttaatagattgaacttaatttacaggtagccaactt |
236 |
Q |
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| T |
43293100 |
ttaatagattgaacttaatttacaggtagccaactt |
43293065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44027677 - 44027913
Alignment:
| Q |
1 |
aggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtgtatgagacaactcacaagtggactaaaaatactgttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44027677 |
aggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtgtatgaaacaactcacaagtggactaaaaataccgttta |
44027776 |
T |
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| Q |
101 |
caccatcctgttatgatccggcaaaaatataaacggatttggaaaagaagaaaagaaatatgccaagcatg-aatcttattcttgaagatactttaggat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44027777 |
caccatcctgttatgatccggcaaaaatataaacggatttggaaaagaaaaaaagaaatatgccaagcatgaaatcttattcttgaagatactttaggat |
44027876 |
T |
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| Q |
200 |
tttaatagattgaacttaatttacaggtagccaactt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44027877 |
tttaatagattgaacttaatttacaggtagccaactt |
44027913 |
T |
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