View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7989_low_15 (Length: 226)

Name: NF7989_low_15
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7989_low_15
NF7989_low_15
[»] chr2 (34 HSPs)
chr2 (17-226)||(38792414-38792622)
chr2 (56-133)||(38793217-38793294)
chr2 (32-140)||(39136859-39136967)
chr2 (45-134)||(38792701-38792790)
chr2 (49-155)||(38792567-38792673)
chr2 (45-126)||(39415769-39415850)
chr2 (46-126)||(39390580-39390660)
chr2 (15-134)||(38792923-38793042)
chr2 (47-126)||(39221679-39221758)
chr2 (51-126)||(39451714-39451789)
chr2 (45-143)||(39415500-39415598)
chr2 (64-125)||(39137302-39137363)
chr2 (45-98)||(39415161-39415214)
chr2 (172-223)||(39136877-39136928)
chr2 (48-134)||(39192615-39192701)
chr2 (48-134)||(39198295-39198381)
chr2 (48-126)||(39390160-39390238)
chr2 (64-126)||(39390370-39390432)
chr2 (66-143)||(39602969-39603046)
chr2 (178-226)||(38793217-38793265)
chr2 (179-223)||(39221689-39221733)
chr2 (46-109)||(39192892-39192955)
chr2 (46-109)||(39198572-39198635)
chr2 (179-226)||(39390182-39390229)
chr2 (179-226)||(39390602-39390649)
chr2 (171-206)||(39415175-39415210)
chr2 (59-109)||(39193102-39193152)
chr2 (59-109)||(39198782-39198832)
chr2 (166-219)||(39415546-39415599)
chr2 (172-220)||(39161446-39161494)
chr2 (172-220)||(39207700-39207748)
chr2 (90-134)||(39222562-39222606)
chr2 (51-131)||(39451462-39451542)
chr2 (64-124)||(39473931-39473991)
[»] chr7 (2 HSPs)
chr7 (45-124)||(19807233-19807312)
chr7 (172-223)||(19807238-19807289)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 38792414 - 38792622
Alignment:
Q  17 gtgttgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagag 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792414 gtgttgagacaaaagcagtttgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagag 38792513  T
Q  117 aatttgaaggtcaagtgatagagctggtgactgattttggtattaaatcagaacgaaggaacttgagtcaaaagagaagcaacatgaaggccaggtggag 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38792514 aatttgaaggtcaagtgatagagctggtgactga-tttggtattaaatcagaacgaaggaacttgagtcgaaagagaagcaacatgaaggccaggtggag 38792612  T
Q  217 gagcatgaat 226  Q
    ||||||||||    
T  38792613 gagcatgaat 38792622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 38793217 - 38793294
Alignment:
Q  56 cttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtg 133  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||    
T  38793217 cttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaattaaaagctagagaatttgaaggtaaagtg 38793294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 39136859 - 39136967
Alignment:
Q  32 cagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaag 131  Q
    ||||| |||| | |||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||| | ||||    
T  39136859 cagtttgagaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaag 39136958  T
Q  132 tgatagagc 140  Q
    |||| ||||    
T  39136959 tgatggagc 39136967  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 38792701 - 38792790
Alignment:
Q  45 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 134  Q
    ||||||||||||||||||  ||||| |||||  ||||||| |||||||||||||| |||||||||  |||||||||||||||||||||||    
T  38792701 gaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 38792790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 38792567 - 38792673
Alignment:
Q  49 gaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgact 148  Q
    |||||| |||||||  ||||||||||| |||||||| | |||| |||||||||||||||||| |||||||||| ||| ||| ||||  |||||||||| |    
T  38792567 gaaggaacttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaat 38792666  T
Q  149 gattttg 155  Q
    |||||||    
T  38792667 gattttg 38792673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 39415850 - 39415769
Alignment:
Q  45 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    |||| ||||| ||||| | ||||||||||||||||||||| |||||||| ||||||| |||||||  |||||||||||||||    
T  39415850 gaatcaaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaagg 39415769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 39390660 - 39390580
Alignment:
Q  46 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    |||||||||  |||||| |||||||||||| |||||| | || |||||||||||||||||||||  |||||||||||||||    
T  39390660 aatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaagg 39390580  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 38792923 - 38793042
Alignment:
Q  15 tggtgttgagacaaaagcagttcgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgag 114  Q
    |||| |||| ||| ||||| ||||| |||  ||||||||| |||||||| |||||||| ||  ||||||  ||| ||||||||||||| ||||| | | |    
T  38792923 tggtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcatgactcaaagaagcg 38793022  T
Q  115 agaatttgaaggtcaagtga 134  Q
    ||||||||||||||||||||    
T  38793023 agaatttgaaggtcaagtga 38793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 39221679 - 39221758
Alignment:
Q  47 atgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    ||||||||  |||||| |||||||||||| ||||||||  ||||||||||||||| |||||||  |||||||||||||||    
T  39221679 atgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaagg 39221758  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 39451714 - 39451789
Alignment:
Q  51 aggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    |||||||||| ||||| |||| ||| ||||| || ||||||| ||||||||||||||||  |||||||||||||||    
T  39451714 aggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttgaagg 39451789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 39415598 - 39415500
Alignment:
Q  45 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctgg 143  Q
    |||||||||| ||||||  |||||||||||| ||||||||||  |||||||||  ||||||||||  |||||||||| || | |||||||  |||||||    
T  39415598 gaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaaagccaagtgagggagctgg 39415500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 39137302 - 39137363
Alignment:
Q  64 aaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaag 125  Q
    ||||||||| || |||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  39137302 aaaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaag 39137363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 39415214 - 39415161
Alignment:
Q  45 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagc 98  Q
    |||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  39415214 gaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 39136877 - 39136928
Alignment:
Q  172 aaggaacttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatg 223  Q
    ||||| |||||||||||||||||||| |||||||||| |||| |||||||||    
T  39136877 aaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatg 39136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 39192701 - 39192615
Alignment:
Q  48 tgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 134  Q
    |||||||  |||||| |||||||||||| |||||||  |  |||||||||| ||||||||||  ||||||||| ||||| |||||||    
T  39192701 tgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtga 39192615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 39198381 - 39198295
Alignment:
Q  48 tgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 134  Q
    |||||||  |||||| |||||||||||| |||||||  |  |||||||||| ||||||||||  ||||||||| ||||| |||||||    
T  39198381 tgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtga 39198295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 39390238 - 39390160
Alignment:
Q  48 tgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    |||||||  |||||| |||||||||||| |||||| | || ||||||||||||||||| |||  |||||| ||||||||    
T  39390238 tgaaggattttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaagg 39390160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 39390432 - 39390370
Alignment:
Q  64 aaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 126  Q
    |||||||||||| |||||| | || ||||||||||||| |||||||  |||||||||||||||    
T  39390432 aaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaagg 39390370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 39602969 - 39603046
Alignment:
Q  66 aagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctgg 143  Q
    |||||||| | |||||| ||||| ||||||||||||||||||||   ||||| |||||||| |||||||  |||||||    
T  39602969 aagagaagaaacatgaaagtcggttgaaggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctgg 39603046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 38793217 - 38793265
Alignment:
Q  178 cttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatgaat 226  Q
    ||||||| ||||||||||||||||||||| | |||| ||||||||||||    
T  38793217 cttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaat 38793265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 39221689 - 39221733
Alignment:
Q  179 ttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatg 223  Q
    |||||||||||||||||||||||||||||  |||| |||||||||    
T  39221689 ttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatg 39221733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 39192955 - 39192892
Alignment:
Q  46 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaa 109  Q
    ||||||||| ||||||| ||| |||| ||| |||||||||||||||||| ||  ||||||||||    
T  39192955 aatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaa 39192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 39198635 - 39198572
Alignment:
Q  46 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaa 109  Q
    ||||||||| ||||||| ||| |||| ||| |||||||||||||||||| ||  ||||||||||    
T  39198635 aatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaa 39198572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 39390229 - 39390182
Alignment:
Q  179 ttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatgaat 226  Q
    |||||||||||||||||||||||||| |||  ||| ||||||||||||    
T  39390229 ttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaat 39390182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 39390649 - 39390602
Alignment:
Q  179 ttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatgaat 226  Q
    |||||||||||||||||||||||||| |||  ||| ||||||||||||    
T  39390649 ttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaat 39390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 39415210 - 39415175
Alignment:
Q  171 gaaggaacttgagtcaaaagagaagcaacatgaagg 206  Q
    |||||| |||||||||||||||||||||||||||||    
T  39415210 gaaggagcttgagtcaaaagagaagcaacatgaagg 39415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 39193152 - 39193102
Alignment:
Q  59 gagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaa 109  Q
    ||||||||||||| ||| |||||||||||||||||| ||  ||||||||||    
T  39193152 gagttaaaagagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaa 39193102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 39198832 - 39198782
Alignment:
Q  59 gagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaa 109  Q
    ||||||||||||| ||| |||||||||||||||||| ||  ||||||||||    
T  39198832 gagttaaaagagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaa 39198782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 39415599 - 39415546
Alignment:
Q  166 agaacgaaggaacttgagtcaaaagagaagcaacatgaaggccaggtggaggag 219  Q
    |||| |||||| |||||| |||||||||||||||||||||| || ||| |||||    
T  39415599 agaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggag 39415546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 39161446 - 39161494
Alignment:
Q  172 aaggaacttgagtcaaaagagaagcaacatgaaggccaggtggaggagc 220  Q
    ||||||||||||||||||||||||||  ||||||| |  ||||||||||    
T  39161446 aaggaacttgagtcaaaagagaagcagtatgaaggacgagtggaggagc 39161494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 39207748 - 39207700
Alignment:
Q  172 aaggaacttgagtcaaaagagaagcaacatgaaggccaggtggaggagc 220  Q
    ||||||||||||||||||||||||||  ||||||| |  ||||||||||    
T  39207748 aaggaacttgagtcaaaagagaagcagtatgaaggacgagtggaggagc 39207700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 39222562 - 39222606
Alignment:
Q  90 tgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 134  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||    
T  39222562 tgaaggagcatgaatcaaaagagagagaatttgaaattcaagtga 39222606  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 39451462 - 39451542
Alignment:
Q  51 aggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaag 131  Q
    |||||||||| | ||| |||||||| | |||| | ||| ||||||||||||||||||||   ||||| |||||||| ||||    
T  39451462 aggaccttgactcaaatgagaagcaacttgaaagccggttgaaggagcatgaatcaaaagaaagagagtttgaaggccaag 39451542  T

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Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 39473991 - 39473931
Alignment:
Q  64 aaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaa 124  Q
    |||||||||||||| ||| || || ||| |||||||| ||||||||  |||||||||||||    
T  39473991 aaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttgaa 39473931  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 19807233 - 19807312
Alignment:
Q  45 gaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaa 124  Q
    |||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||  |||||||||||||    
T  19807233 gaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaa 19807312  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 19807238 - 19807289
Alignment:
Q  172 aaggaacttgagtcaaaagagaagcaacatgaaggccaggtggaggagcatg 223  Q
    ||||| |||||||||||||||||||| |||||||||| | || |||||||||    
T  19807238 aaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatg 19807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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