View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7989_low_17 (Length: 218)

Name: NF7989_low_17
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7989_low_17
NF7989_low_17
[»] chr2 (45 HSPs)
chr2 (8-218)||(39415582-39415792)
chr2 (56-218)||(39136930-39137092)
chr2 (1-218)||(38792759-38792976)
chr2 (66-195)||(39222136-39222265)
chr2 (66-195)||(39221926-39222055)
chr2 (33-218)||(39222239-39222424)
chr2 (57-218)||(39222575-39222736)
chr2 (27-189)||(39192581-39192743)
chr2 (27-189)||(39198261-39198423)
chr2 (7-161)||(39389804-39389958)
chr2 (33-218)||(39390544-39390729)
chr2 (68-218)||(39415393-39415540)
chr2 (33-214)||(39389998-39390179)
chr2 (33-145)||(39390670-39390782)
chr2 (115-218)||(39222029-39222132)
chr2 (34-201)||(39451279-39451446)
chr2 (115-217)||(39221820-39221922)
chr2 (147-218)||(39390322-39390393)
chr2 (33-92)||(39390334-39390393)
chr2 (147-218)||(39390532-39390603)
chr2 (77-204)||(39398145-39398272)
chr2 (147-218)||(39451766-39451837)
chr2 (27-145)||(39389698-39389816)
chr2 (36-145)||(39390127-39390236)
chr2 (154-218)||(39603006-39603070)
chr2 (138-218)||(39603216-39603296)
chr2 (65-196)||(39136826-39136957)
chr2 (77-204)||(39467959-39468086)
chr2 (164-218)||(39473898-39473952)
chr2 (32-105)||(39193048-39193121)
chr2 (32-105)||(39198728-39198801)
chr2 (165-218)||(39458774-39458827)
chr2 (57-145)||(39221682-39221770)
chr2 (57-173)||(39602799-39602915)
chr2 (163-218)||(39192591-39192646)
chr2 (163-218)||(39198271-39198326)
chr2 (57-196)||(39415757-39415896)
chr2 (138-217)||(39458607-39458686)
chr2 (52-143)||(39467894-39467985)
chr2 (57-143)||(39398251-39398337)
chr2 (36-218)||(39415484-39415666)
chr2 (56-109)||(39381681-39381734)
chr2 (154-218)||(39222365-39222429)
chr2 (120-204)||(39398524-39398608)
chr2 (33-93)||(39451765-39451825)
[»] chr5 (4 HSPs)
chr5 (44-193)||(33560519-33560668)
chr5 (147-218)||(17059268-17059339)
chr5 (35-217)||(33560579-33560761)
chr5 (57-143)||(33560191-33560277)
[»] chr7 (2 HSPs)
chr7 (61-196)||(19807187-19807322)
chr7 (147-218)||(19807291-19807362)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 39415582 - 39415792
Alignment:
Q  8 ctcaagttccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39415582 ctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatt 39415681  T
Q  108 tggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctc 207  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39415682 tggtctacgagttgctgttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctc 39415781  T
Q  208 tctcttttgat 218  Q
    |||||||||||    
T  39415782 tctcttttgat 39415792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 39137092 - 39136930
Alignment:
Q  56 ttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatt 155  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  39137092 ttccttcatttggccttcaaattccatctcttttgatttaaactccttcatttggtctacaagttggttttcttttgactctaacgccttgacttggatt 39136993  T
Q  156 tcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||| ||||||||| ||| | ||||| |||| |||| ||||||||||||||||||||||    
T  39136992 tcaaacagtttctttttaaattgctgctccatcacttggctttcaaattctctctcttttgat 39136930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38792976 - 38792759
Alignment:
Q  1 ctttcaactcaagttccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactc 100  Q
    |||||||||||||||||||||||   |||| |||||||||||||||  || |||| ||||||||||||| ||| ||||| |||||| |||| | ||||||    
T  38792976 ctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcgaattctctctctattgactcaaactc 38792877  T
Q  101 cttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttca 200  Q
    |||||||| |  ||||||||| || ||||||||||| |||||||| |||||  |||||||||  |||| |||||||| | | |||||||| || ||||||    
T  38792876 cttcattttgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaatttctgtttagattcctggtccttcacttgaccttca 38792777  T
Q  201 aattctctctcttttgat 218  Q
    ||||||||||||||||||    
T  38792776 aattctctctcttttgat 38792759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 39222265 - 39222136
Alignment:
Q  66 tggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagct 165  Q
    |||||||||||||||||||||||||||||||||| | ||| |||| |||||||||| || |||||||||| ||||||||| |||||| ||||||||||||    
T  39222265 tggccttcaaattccctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagct 39222166  T
Q  166 tctttttagatttcagctccttcacctggc 195  Q
    |||||||||||| |||||||||||| ||||    
T  39222165 tctttttagattccagctccttcacttggc 39222136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 39222055 - 39221926
Alignment:
Q  66 tggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagct 165  Q
    ||||||||||||| |||||||||||||||||||| | ||| |||| |||||||||| || |||||||||| ||||||||| |||||| ||||||||||||    
T  39222055 tggccttcaaattgcctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagct 39221956  T
Q  166 tctttttagatttcagctccttcacctggc 195  Q
    |||||||||||| |||||||||||| ||||    
T  39221955 tctttttagattccagctccttcacttggc 39221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 39222424 - 39222239
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttg 132  Q
    |||||||||| ||| ||| |||||||||||| ||||||||| ||| | |||||||||||||||  |||||||| |||| || |||||||||| ||||| |    
T  39222424 aaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttag 39222325  T
Q  133 actctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||| |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||| ||||||||||||    
T  39222324 actcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttgat 39222239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 39222736 - 39222575
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggattt 156  Q
    ||||||| |||  ||||||||||| |||| ||||||| ||||||||| |||| |  || |||||| || |||||||||||||||||||| |||||| |||    
T  39222736 tccttcacttgttcttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggcttt 39222637  T
Q  157 caaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    ||| | ||||||||||||||| |||||||||||| ||   ||||||||||||||||||||||    
T  39222636 caacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgat 39222575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 39192581 - 39192743
Alignment:
Q  27 cttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgctttt 126  Q
    ||||| |||||||||| | | ||| | |||||||||| ||||||||| ||||| ||||||||||||| |  |||||||| |||| || || | ||||| |    
T  39192581 cttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttct 39192680  T
Q  127 cttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttca 189  Q
    |||||||||| |||||||| ||||||  |||||| |||||||||||||||| |||||||||||    
T  39192681 cttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 39198261 - 39198423
Alignment:
Q  27 cttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgctttt 126  Q
    ||||| |||||||||| | | ||| | |||||||||| ||||||||| ||||| ||||||||||||| |  |||||||| |||| || || | ||||| |    
T  39198261 cttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttct 39198360  T
Q  127 cttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttca 189  Q
    |||||||||| |||||||| ||||||  |||||| |||||||||||||||| |||||||||||    
T  39198361 cttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39198423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 39389804 - 39389958
Alignment:
Q  7 actcaagttccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcat 106  Q
    ||||||| |||||||||   |||||  |||||||||||||  || || | |||| |||||||| ||||||| ||||||||||||||| ||||||| ||||    
T  39389804 actcaagctccttcatttggcttttataatgcttctgtttcaatacctgctcctccatttggcattcaaatcccctctcttttgattcaaactccatcat 39389903  T
Q  107 ttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaac 161  Q
    || | |||||||||| || |||||||||||||||||||| ||||||  |||||||    
T  39389904 tttgcctacaagttggttatcttttgactctaactccttcacttggccttcaaac 39389958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 39390544 - 39390729
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttg 132  Q
    |||||||||  ||| ||| |||||||||||||||||||||||||||| ||||||||||||| |  |||||||| | ||  | || ||||||| |||||||    
T  39390544 aaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttg 39390643  T
Q  133 actctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||| |||||||| | |||| |||||||  |||||| ||| |||  ||  ||| |||  |||| |||||||||  |||||||||||    
T  39390644 actcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatccatcatttggcattcaaattccttctcttttgat 39390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 39415393 - 39415540
Alignment:
Q  68 gccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagcttc 167  Q
    |||||||| |||||||||||||| || ||||||||||| |||| ||||| | |   | |  |||||||| |||||||| |||||  |||||||  |||||    
T  39415393 gccttcaatttccctctcttttggttcaaactccttcacttggcctacacggt---tatactttgactccaactcctttacttgtctttcaaattgcttc 39415489  T
Q  168 tttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||||| ||||||| |||| |||| || |||||||||||||||||||    
T  39415490 tttttagattccagctccctcacttggcttttaaattctctctcttttgat 39415540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 39389998 - 39390179
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttg 132  Q
    |||| |||||||||||||||||  ||| ||||||||| |||||||||| |||| ||  | | ||| || || | ||   |||||||||  ||  |||| |    
T  39389998 aaatccttctgttttgatgccaagtccatcatttggcattcaaattccttctccttaaactcaaaatcttttacttttcctacaagttcgttacctttag 39390097  T
Q  133 actctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttt 214  Q
    ||||||||||||| |||||| |||| | | ||||||||||||||| ||| |||||||  ||||||||||| |||||||||||    
T  39390098 actctaactccttaacttggctttcgacctgcttctttttagattccagttccttcatttggccttcaaaatctctctcttt 39390179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 39390670 - 39390782
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttg 132  Q
    ||||||||||||||||||  ||  ||| ||||||||| |||||||||| |||||||||||| ||||||||| | || | |||||| ||  || |||||||    
T  39390670 aaatgcttctgttttgatagcaaatccatcatttggcattcaaattccttctcttttgattcaaactcctttactttgcctacaaatttgttatcttttg 39390769  T
Q  133 actctaactcctt 145  Q
    |||| ||||||||    
T  39390770 actcaaactcctt 39390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 39222132 - 39222029
Alignment:
Q  115 caagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttt 214  Q
    |||||||||| ||||| ||||| |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||  ||||||||    
T  39222132 caagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttt 39222033  T
Q  215 tgat 218  Q
    ||||    
T  39222032 tgat 39222029  T

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Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 39451446 - 39451279
Alignment:
Q  34 aatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttga 133  Q
    |||| ||||||||| || |||  ||||||||||| | |||||| ||  | ||||||| || ||||||||||| |||| |||||||||| |||||| ||||    
T  39451446 aatgtttctgttttaattccaactccttcatttgactttcaaactctttttcttttgtttcaaactccttcacttggcctacaagttggttttctattga 39451347  T
Q  134 ctctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaa 201  Q
    ||  ||| |||| | |||| |||||||  ||| ||||||| ||| ||||||||| |  ||||||||||    
T  39451346 ctgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctccttgatttggccttcaa 39451279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 39221922 - 39221820
Alignment:
Q  115 caagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttt 214  Q
    |||||||||| ||||| ||||| |||||||| | |||| |||| ||  ||||| ||||||||| ||||| |||| |||||||||||||||  ||||||||    
T  39221922 caagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattgcctctcttt 39221823  T
Q  215 tga 217  Q
    |||    
T  39221822 tga 39221820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 39390322 - 39390393
Alignment:
Q  147 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||| |||||||  ||||| ||||||||| ||| |||||||  |||||||||||||||||||||||||||    
T  39390322 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgat 39390393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 39390334 - 39390393
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgat 92  Q
    |||||||||  ||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  39390334 aaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgat 39390393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 39390532 - 39390603
Alignment:
Q  147 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||| |||||||  ||||| ||||||||| ||| |||||||  |||||||||||||||||||||||||||    
T  39390532 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgat 39390603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 39398145 - 39398272
Alignment:
Q  77 ttccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagat 176  Q
    |||| |||||||  |||| |||||||||| | |  |||||||||| || |||||||||||||||||||| | |||| |||||||  |||   ||||| ||    
T  39398145 ttccttctctttgaatttgaactccttcactcgtcctacaagttggttctcttttgactctaactccttcaattggctttcaaagtgctgtattttaaat 39398244  T
Q  177 ttcagctccttcacctggccttcaaatt 204  Q
    | | ||||||||| ||||||||||||||    
T  39398245 tcccgctccttcatctggccttcaaatt 39398272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 39451837 - 39451766
Alignment:
Q  147 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||| |||||||  ||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||||    
T  39451837 acttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgat 39451766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 39389698 - 39389816
Alignment:
Q  27 cttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgctttt 126  Q
    |||| ||||||||||| ||| ||| |||| ||||||  ||| |||||||||||| |||| ||||||| |  ||||| || ||||||| ||||||||||      
T  39389698 ctttcgaaatgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcc 39389797  T
Q  127 cttttgactctaactcctt 145  Q
    |||||||||| | ||||||    
T  39389798 cttttgactcaagctcctt 39389816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 39390127 - 39390236
Alignment:
Q  36 tgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgact 135  Q
    ||||||| ||| ||| ||||||||||||||||||||||||| || |||||||| |||| |  |||||||| | ||  | || ||||||| ||||||||||    
T  39390127 tgcttctttttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctcttttgact 39390226  T
Q  136 ctaactcctt 145  Q
    | || |||||    
T  39390227 caaaatcctt 39390236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 39603070 - 39603006
Alignment:
Q  154 tttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||  ||||||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||    
T  39603070 tttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgat 39603006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 39603296 - 39603216
Alignment:
Q  138 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||  |||||| |||||||  ||||||||||||||| |||||||||| | ||   ||||||||||||||||||||||    
T  39603296 aactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgat 39603216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 39136957 - 39136826
Alignment:
Q  65 ttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagc 164  Q
    ||||| ||||||||| ||||||||||||  |  ||||||||   || || || | ||||| ||||||||||| | |||||||| | || | |||||| |     
T  39136957 ttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggttctcaaactgg 39136858  T
Q  165 ttctttttagatttcagctccttcacctggcc 196  Q
    ||||||||||||| |||||||||||| |||||    
T  39136857 ttctttttagattccagctccttcacttggcc 39136826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 39468086 - 39467959
Alignment:
Q  77 ttccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagat 176  Q
    ||||||||||||  ||| ||||||||||| | |  || ||||||| || ||||||||||| |||||||| | |||| ||| ||   |||  |||||| ||    
T  39468086 ttccctctctttgtattcaaactccttcactcgtcctgcaagttggttctcttttgactccaactccttcaattggctttgaatgtgctgttttttaaat 39467987  T
Q  177 ttcagctccttcacctggccttcaaatt 204  Q
    | ||||||||||| ||||||||||||||    
T  39467986 tccagctccttcatctggccttcaaatt 39467959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 39473898 - 39473952
Alignment:
Q  164 cttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    ||||||||||||||  ||| |||||||||||| |||||||||||||| |||||||    
T  39473898 cttctttttagattctagccccttcacctggctttcaaattctctctgttttgat 39473952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 39193048 - 39193121
Alignment:
Q  32 gaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttca 105  Q
    |||||||| |||||||||| ||   ||| ||||||||| |||||||||| |||||||||||| ||||| |||||    
T  39193048 gaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaaacttcttca 39193121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 39198728 - 39198801
Alignment:
Q  32 gaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttca 105  Q
    |||||||| |||||||||| ||   ||| ||||||||| |||||||||| |||||||||||| ||||| |||||    
T  39198728 gaaatgctcctgttttgataccgagtccgtcatttggcattcaaattccttctcttttgattcaaacttcttca 39198801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 39458827 - 39458774
Alignment:
Q  165 ttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||| |||||||    
T  39458827 ttctttttagattcgagctccttcacatggccttcgaattctctcttttttgat 39458774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 39221770 - 39221682
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactcctt 145  Q
    ||||||||||||||||||||||| ||||||||||||  |  ||||||||    | || || ||||||| ||||||||||| ||||||||    
T  39221770 tccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactcctt 39221682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 39602915 - 39602799
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggattt 156  Q
    |||||| |||||  |||||||||| ||| |||||||| ||||||||| | ||||  ||||||||| || ||| ||||||||||| | || | |||| |||    
T  39602915 tccttcttttggaattcaaattccttctgttttgattcaaactcctttacttggcatacaagttggttatctattgactctaacacattcaattggtttt 39602816  T
Q  157 caaacagcttcttttta 173  Q
    ||||  ||| |||||||    
T  39602815 caaagtgctccttttta 39602799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 39192591 - 39192646
Alignment:
Q  163 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||| ||||||  || |||||||| |||||||| ||||||||||||||||||    
T  39192591 gcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgat 39192646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 39198271 - 39198326
Alignment:
Q  163 gcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||| ||||||  || |||||||| |||||||| ||||||||||||||||||    
T  39198271 gcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgat 39198326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 39415757 - 39415896
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggattt 156  Q
    |||||||  |||||||||||||| ||||||||||||  |  ||| ||||   || || || | ||||| |||||||| || | |||||||| | || |||    
T  39415757 tccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctccttgattcggtttt 39415856  T
Q  157 caaacagcttctttttagatttcagctccttcacctggcc 196  Q
    ||||| ||||||||||||||| ||| ||||| || |||||    
T  39415857 caaactgcttctttttagattccagttcctttacttggcc 39415896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 39458686 - 39458607
Alignment:
Q  138 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttga 217  Q
    |||||||  |||||| |||||||   |||||||| ||||| |||||||||||||||  ||||||| ||||||| ||||||    
T  39458686 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttga 39458607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 39467985 - 39467894
Alignment:
Q  52 ccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactcc 143  Q
    |||| |||||||| ||||||||||||| |  ||||||||||| |||||||||| |  || || |||| ||| | ||||||||||||| ||||    
T  39467985 ccagctccttcatctggccttcaaatttctcctcttttgattcaaactccttcttccggccttcaagctgcatctcttttgactctagctcc 39467894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 39398251 - 39398337
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactcc 143  Q
    |||||||| ||||||||||||| |  ||||||||| | |||||||||| |  || || |||||||| | ||||||||||||| ||||    
T  39398251 tccttcatctggccttcaaatttctcctcttttgactcaaactccttcttccggccttcaagttgcatctcttttgactctagctcc 39398337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 39415484 - 39415666
Alignment:
Q  36 tgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgact 135  Q
    ||||||| ||| ||| |||| ||| ||| ||||| || |||||| ||||||||||||| | ||||||||| |||  || || ||||||| ||||||| ||    
T  39415484 tgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgaccttcatgttgcttctcttttgcct 39415583  T
Q  136 ctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    | | |||||| | |    |||  ||  |||||| ||| |||  ||| |||||||  |||||||||||||| ||||||||||||    
T  39415584 caagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgat 39415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 39381681 - 39381734
Alignment:
Q  56 ttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttg 109  Q
    |||||||| || |||||||||||||  ||||||| ||| |||||||||||||||    
T  39381681 ttccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttg 39381734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 39222429 - 39222365
Alignment:
Q  154 tttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||  |||||||||| |||| ||| |||||||  |||||||| ||| ||||||||||||||    
T  39222429 tttcaaaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgat 39222365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 39398524 - 39398608
Alignment:
Q  120 tgcttttcttttgactctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaatt 204  Q
    ||||| || ||||||||||||||||| | | ||||||||||  |||||| ||| |||   ||||||||| | |||||||||||||    
T  39398524 tgcttctcctttgactctaactccttcaatcggatttcaaaatgcttctgttttgatacaagctccttctcttggccttcaaatt 39398608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 39451825 - 39451765
Alignment:
Q  33 aaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatt 93  Q
    |||||||||| ||| ||| |||| ||||||| || |||||||||||| ||| |||||||||    
T  39451825 aaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgatt 39451765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 33560668 - 33560519
Alignment:
Q  44 ttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactcc 143  Q
    ||||||| |||  ||||||| |||||||||||||||| ||| |||| ||||||||||||||| |||| ||||||||||  | ||||||||||| ||||||    
T  33560668 ttttgattccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactcc 33560569  T
Q  144 ttgacttggatttcaaacagcttctttttagatttcagctccttcacctg 193  Q
    || |||||  |||||||  | ||||||||||||| |||||||||||||||    
T  33560568 ttaacttgtctttcaaagtggttctttttagattccagctccttcacctg 33560519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 17059339 - 17059268
Alignment:
Q  147 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||||| |||||   ||| |||||||||| ||||||||||||  ||||||||||||| ||||||||||||    
T  17059339 acttggatatcaaaatccttttttttagattccagctccttcactaggccttcaaattcactctcttttgat 17059268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 33560761 - 33560579
Alignment:
Q  35 atgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgac 134  Q
    ||||||||||||||||  ||  ||| ||||||||| |||||| ||| |||||||||||| ||||  ||| | || | |||||||||  || ||||||||     
T  33560761 atgcttctgttttgatagcaagtccatcatttggcattcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgat 33560662  T
Q  135 tctaactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttga 217  Q
    || |||||||| | ||||  ||||||   |||||||||  |||| | ||||||||  |||||| ||| ||  |||||||||||    
T  33560661 tccaactccttcagttggccttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttga 33560579  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 33560277 - 33560191
Alignment:
Q  57 tccttcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactcc 143  Q
    ||||||||||||  |||||| ||| |||||||||||| |||||||||||   || || || ||||| | ||||||||||||| ||||    
T  33560277 tccttcatttggttttcaaaatccttctcttttgattcaaactccttcacccggccttcatgttgcatctcttttgactctagctcc 33560191  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 19807322 - 19807187
Alignment:
Q  61 tcatttggccttcaaattccctctcttttgatttaaactccttcatttggtctacaagttgcttttcttttgactctaactccttgacttggatttcaaa 160  Q
    ||||||||| ||||||||| ||||||||||||  |  |||||||||  || || || | ||||| ||||||||||| | |||||||| | || |||||||    
T  19807322 tcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattcggttttcaaa 19807223  T
Q  161 cagcttctttttagatttcagctccttcacctggcc 196  Q
    | || |||||||||||| |||||||||||| |||||    
T  19807222 ctgcctctttttagattccagctccttcacttggcc 19807187  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 19807362 - 19807291
Alignment:
Q  147 acttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttgat 218  Q
    |||||| |||||||||||||||||||||||| | ||||| |||  |||| ||||||||||||||||||||||    
T  19807362 acttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgat 19807291  T

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