View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7989_low_3 (Length: 507)

Name: NF7989_low_3
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7989_low_3
NF7989_low_3
[»] chr8 (3 HSPs)
chr8 (14-405)||(24671083-24671477)
chr8 (407-460)||(8084360-8084413)
chr8 (407-489)||(36917472-36917554)
[»] chr7 (3 HSPs)
chr7 (407-489)||(47710412-47710494)
chr7 (407-489)||(47722068-47722150)
chr7 (407-489)||(48661588-48661670)
[»] chr1 (2 HSPs)
chr1 (435-489)||(51460268-51460322)
chr1 (418-489)||(25145764-25145835)
[»] chr4 (2 HSPs)
chr4 (409-489)||(6218408-6218488)
chr4 (407-489)||(28245559-28245641)
[»] chr3 (2 HSPs)
chr3 (406-465)||(30179740-30179799)
chr3 (407-456)||(20303097-20303146)
[»] chr6 (2 HSPs)
chr6 (418-464)||(12199729-12199775)
chr6 (407-464)||(17147693-17147750)
[»] chr5 (2 HSPs)
chr5 (407-489)||(11895949-11896030)
chr5 (408-465)||(17352702-17352759)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 24671083 - 24671477
Alignment:
Q  14 ttggtgttggaagttgaagaggataaaagtgtttgagaagggtattgggctaggcaagttattaaatagggatattacgtgagggagacaagtaaatgaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24671083 ttggtgttggaagttgaagaggataaaagtgtttgagaagggtattgggctaggcaagttattaaatagggatattacgtgagggagacaagtaaatgaa 24671182  T
Q  114 a--taggaatgggagagatactccatactgtcctttttgcatatgtccccatagggttaagggaaatgtgagcttgtttgttgtatcannnnnnnaactg 211  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  24671183 aaataggaatgggagagatactccatactgtcctttttgcatatgtccccatagggttaagggaaatgtgagcttgtttgttgtatcacccccccaactg 24671282  T
Q  212 catggggacctctttgtgtcaggctcagcacacaagcccatgttatgttattacttcattgtcattttaatcatttaagtttcatgtagttttcttagtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24671283 catggggacctctttgtgtcaggctcagcacacaagcccatgttatgttattacttcattgtcattttaatcatttaagtttcatgtagttttcttagtt 24671382  T
Q  312 tagaatttagattgtta-ccccccatttgtatggtttaggtggtaaaaagttgagagatgtgtgatatgttgagaggcaagattctttagagcaa 405  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24671383 tagaatttagattgttacccccccatatgtatggtttaggtggtaaaaagttgagagatgtgtgatatgttgagaggcaaaattctttagagcaa 24671477  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 8084413 - 8084360
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttagg 460  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  8084413 acaaaactggtttgtgaggtgaggtttacccccacttataaatacattgttagg 8084360  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 36917472 - 36917554
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    |||||||||  |||||| |||||| ||||||| |||| |||||||||||| ||| ||| | |||||| |||| ||||||||||    
T  36917472 acaaaactgacttgtgatgtgaggattacccccacttataaatacattgtcaggccattacctatctgatgtgagactcttaa 36917554  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 47710494 - 47710412
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    |||||||||| ||||||||||||| || |||| |||| |||| ||||||| ||| ||||| |||||  |||| ||||||||||    
T  47710494 acaaaactggcttgtgaggtgaggattgcccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaa 47710412  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 47722150 - 47722068
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    |||||||||| ||||||||||||| || |||| |||| |||| ||||||| ||| ||||| |||||  |||| ||||||||||    
T  47722150 acaaaactggcttgtgaggtgaggattgcccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaa 47722068  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 48661588 - 48661670
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||||| || ||||||||||||| || |||| || | |||||||||||| ||||||||  |||||| ||||  |||||||||    
T  48661588 acaaaaccggcttgtgaggtgaggattgcccccacctataaatacattgtcaggtcatctcctatctgatgtgggactcttaa 48661670  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 51460268 - 51460322
Alignment:
Q  435 cccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||||| |||||||||    
T  51460268 cccctacttataaacacattgttaggtcatcacctatctgatgttggactcttaa 51460322  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 25145764 - 25145835
Alignment:
Q  418 ttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||||||||||| || |||| |||  |||||||||||| ||||||||| |||||  |||| ||||||||||    
T  25145764 ttgtgaggtgaggattgcccccactaataaatacattgtcaggtcatcacctatccgatgtgagactcttaa 25145835  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 6218488 - 6218408
Alignment:
Q  409 aaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||| || ||||||||||| | || |||| |||| |||| ||||||||||||||||  |||||| |||| ||||||||||    
T  6218488 aaaaccggcttgtgaggtgatgattgcccccacttataaacacattgttaggtcatctcctatctgatgtgagactcttaa 6218408  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 28245559 - 28245641
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||||| || ||||||||||||| || |||| |||| |||| ||||||| ||| ||||| |||||  |||| ||||||||||    
T  28245559 acaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgagactcttaa 28245641  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 30179740 - 30179799
Alignment:
Q  406 tacaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatc 465  Q
    ||||||||||  ||||||||||||| ||||||| |||| |||| ||||||| ||||||||    
T  30179740 tacaaaactgacttgtgaggtgaggattacccccacttataaacacattgtcaggtcatc 30179799  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 20303097 - 20303146
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgt 456  Q
    ||||||| |||||||||||||||| || |||| |||| ||||||||||||    
T  20303097 acaaaaccggtttgtgaggtgaggattgcccccacttataaatacattgt 20303146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 12199729 - 12199775
Alignment:
Q  418 ttgtgaggtgagggttacccctacttttaaatacattgttaggtcat 464  Q
    ||||||||||||| ||||||| |||| |||||||||||| |||||||    
T  12199729 ttgtgaggtgaggattacccccacttataaatacattgtcaggtcat 12199775  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 17147693 - 17147750
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcat 464  Q
    ||||||| || ||||||||||||| || |||| |||| |||||||||||| |||||||    
T  17147693 acaaaaccggcttgtgaggtgaggattgcccccacttataaatacattgtcaggtcat 17147750  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 11895949 - 11896030
Alignment:
Q  407 acaaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatcaactatctcatgttagactcttaa 489  Q
    ||||||||| |||||||| ||| | || |||| |||| |||||||||||| ||||||||| |||||  |||| ||||||||||    
T  11895949 acaaaactgatttgtgagatgatgattgcccc-acttataaatacattgtcaggtcatcacctatccaatgtaagactcttaa 11896030  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 17352702 - 17352759
Alignment:
Q  408 caaaactggtttgtgaggtgagggttacccctacttttaaatacattgttaggtcatc 465  Q
    ||||| ||| ||||||||||| | ||||||| |||| |||| ||||||||||||||||    
T  17352702 caaaattggcttgtgaggtgaagattacccccacttataaacacattgttaggtcatc 17352759  T

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