View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7989_low_5 (Length: 474)
Name: NF7989_low_5
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_low_5 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 37367726 - 37367281
Alignment:
| Q |
16 |
tattgatcactgatgttaatttttgggggtttaggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcacctt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367726 |
tattgatcactgatgttaatttttgggggtttaggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcacctt |
37367627 |
T |
|
| Q |
116 |
caactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367626 |
caactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgc |
37367527 |
T |
|
| Q |
216 |
caaagaaggttgctggaaagaagggtgaaattggatccgttagtcaggagttttagggtttttatgttggatcgttaaaatgttagatttagtagattca |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367526 |
caaagaaggttgctggaaagaagggtgaaattggatccgttagtcaggagttttagggtttttatgttggatcgttaaaatgttagatttagtagattca |
37367427 |
T |
|
| Q |
316 |
gttttattggtattttgttatgcaatcgtgttcttatttttgagattaggtaggattaatgttggatgatgtatagatctttattctgattctgataatg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
37367426 |
gttttattggtattttgttatgcaatcgtgttcttatttttgagattaggtaggattaatgttggatgatgtatagatcttcattctgataatgataat- |
37367328 |
T |
|
| Q |
416 |
ataatataatatt-----agattttgtcttccacttatgcagatgtc |
457 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||| ||||| |
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| T |
37367327 |
ataatattagatttctgcagattttgtcttccacttatgcatatgtc |
37367281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 47033141 - 47033322
Alignment:
| Q |
46 |
ttaggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattg |
145 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |||||||||| | ||||||||||||||| |||| || ||||| || |||||||||||| | |
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| T |
47033141 |
ttaggttttggaattggctggaaatgccgctagggacaacaagaagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactc |
47033240 |
T |
|
| Q |
146 |
agcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgccaaagaaggttg |
227 |
Q |
| |
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||||| | || ||| |||||| |||||||||||||||||| |||| || ||||| ||||||||| | || |||||||||| |
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| T |
47033241 |
agcaagcttttaggaactgtgaccattgctaatggtggtgttctgcccaatattcatcagactttgcttcctaagaaggttg |
47033322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 47039425 - 47039606
Alignment:
| Q |
46 |
ttaggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattg |
145 |
Q |
| |
|
||||||||||||||||||||| || ||||| || || |||||||||| | ||||||||||||||| |||| || || ||||||||||| || ||| | |
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| T |
47039425 |
ttaggttttggaattggctgggaacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactc |
47039524 |
T |
|
| Q |
146 |
agcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgccaaagaaggttg |
227 |
Q |
| |
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||||| | |||||| |||||| ||||||||||||||||||||||| || ||||| ||||||||| | || |||||||||| |
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| T |
47039525 |
agcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaatattcatcagactttgctccctaagaaggttg |
47039606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 47035435 - 47035326
Alignment:
| Q |
114 |
ttcaactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgtt |
213 |
Q |
| |
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||||||| ||||| ||||||||||||||| | ||||| | |||||| ||| || |||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
47035435 |
ttcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcctaacattcatcagactttgct |
47035336 |
T |
|
| Q |
214 |
gccaaagaag |
223 |
Q |
| |
|
|||||||||| |
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|
| T |
47035335 |
gccaaagaag |
47035326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 44071965 - 44071806
Alignment:
| Q |
48 |
aggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgag |
147 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||| |||||||||| | ||||| |||||||| |||| || ||||||||||| || |||||| | || |
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| T |
44071965 |
aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag |
44071866 |
T |
|
| Q |
148 |
caaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcaccagac |
207 |
Q |
| |
|
||| | |||||| ||| || ||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
44071865 |
caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattcatcagac |
44071806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 46584523 - 46584568
Alignment:
| Q |
47 |
taggttttggaattggctggtaatgctgcaagggataacaagaaga |
92 |
Q |
| |
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|||||| | ||||||||||| ||||||||||| ||||||||||||| |
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| T |
46584523 |
taggttcttgaattggctgggaatgctgcaagagataacaagaaga |
46584568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 2577958 - 2577906
Alignment:
| Q |
98 |
attgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgagcaa |
150 |
Q |
| |
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||||| |||||||| ||||| | | ||||||||||||||||||||||||||| |
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| T |
2577958 |
attgtgccaaggcatattcaattggttgtgaggaacgatgaagaattgagcaa |
2577906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 158 - 406
Target Start/End: Original strand, 39545935 - 39546179
Alignment:
| Q |
158 |
ggacatgtgactattgctaatggtggtgttttgcctaacattcaccagactttgttgccaaagaaggttgctggaaagaagggtgaaattggatccgtta |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
39545935 |
ggacatgtgattattgctaatggtggtgatt-gcctaacattcaccagactttgttacctaagaaggtttctggaaagaagggagaaattggatccgtta |
39546033 |
T |
|
| Q |
258 |
gtcaggagttttagggtttttatgttggatcgttaaaatgttagatttagtagattcagttttattggtattttgttatgcaatcgtgttcttatttttg |
357 |
Q |
| |
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|||| || ||||||||||||||||| | || || | ||||||||||||||||||||||||||| |||||||||||| |||||||||||| || || |
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| T |
39546034 |
gtcaagaattttagggtttttatgtggtat--ttggttttttagatttagtagattcagttttattgttattttgttatgttatcgtgttctta-ttatg |
39546130 |
T |
|
| Q |
358 |
agattaggtaggattaatgttggatgatgtatagatctttattctgatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39546131 |
agattaggtaggattaatgttggatgatgtatagatcttcattctgatt |
39546179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 34622720 - 34622875
Alignment:
| Q |
47 |
taggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattga |
146 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||| ||||| | ||||||||||||||||||||||||| |
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| T |
34622720 |
taggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattga |
34622819 |
T |
|
| Q |
147 |
gcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcac |
202 |
Q |
| |
|
|||| | | || |||| ||||||||||||||||||||| |||| || |||||| |
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|
| T |
34622820 |
gcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattcac |
34622875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 34615537 - 34615693
Alignment:
| Q |
46 |
ttaggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattg |
145 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||| ||||| | |||||||||||||||||||||||| |
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| T |
34615537 |
ttaggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattg |
34615636 |
T |
|
| Q |
146 |
agcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcac |
202 |
Q |
| |
|
||||| | | || |||| || |||||||||||||||||| |||| || |||||| |
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|
| T |
34615637 |
agcaagcttcttggtgatgttaccattgctaatggtggtgttatgcccaatattcac |
34615693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 420207 - 420097
Alignment:
| Q |
92 |
acaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattgagcaaattgttgggacatgtgactattgctaatggtggtgttttgc |
191 |
Q |
| |
|
||||| ||||| ||||| ||| ||||| | ||||||||||| ||||||||||||||||| | | || |||| ||||||||||||||||||||| ||| |
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|
| T |
420207 |
acaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatggtggtgttatgc |
420108 |
T |
|
| Q |
192 |
ctaacattcac |
202 |
Q |
| |
|
| || |||||| |
|
|
| T |
420107 |
ccaatattcac |
420097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 29380812 - 29380755
Alignment:
| Q |
332 |
gttatgcaatcgtgttcttatttttgagattaggtaggattaatgttggatgatgtata |
390 |
Q |
| |
|
||||||| || ||||||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
29380812 |
gttatgctattgtgttcttatttt-gagattgggtaggattaatgttgtatgatgtata |
29380755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 17838633 - 17838696
Alignment:
| Q |
332 |
gttatgcaatcgtgttcttatttttgagattaggtaggattaatgttggatgatgtatagatctt |
396 |
Q |
| |
|
||||||| || ||||||||||||| |||||| |||||||||||| ||| ||||||||||| |||| |
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|
| T |
17838633 |
gttatgctattgtgttcttatttt-gagattgggtaggattaatattgtatgatgtatagctctt |
17838696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 21891 - 21933
Alignment:
| Q |
49 |
ggttttggaattggctggtaatgctgcaagggataacaagaag |
91 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
21891 |
ggttttagaattggctggaaatgctgcaagggacaacaagaag |
21933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 1011514 - 1011474
Alignment:
| Q |
49 |
ggttttggaattggctggtaatgctgcaagggataacaaga |
89 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
1011514 |
ggttttagaattggctggaaatgctgcaagggacaacaaga |
1011474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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