View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7989_low_6 (Length: 333)
Name: NF7989_low_6
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 6964516 - 6964814
Alignment:
| Q |
16 |
caaattatttccacttttcattcattcattgattttcatcgacgttgctagaaaggnnnnnnnnnnnnnnnnnnngctgggcatgtttgaaattgattga |
115 |
Q |
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| T |
6964516 |
caaattatttccacttttcattcattcattgattttgatcgacgttgctagaaaggaaaaaaaaaaaaaaaaaaagctgggcatgtttga------ttga |
6964609 |
T |
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| Q |
116 |
taattgatttgaacaatttgcataatataaagataaaaaaggaatatattattatgctaggctatgatggaggaacttccaggagcgtttggaacaagcg |
215 |
Q |
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| T |
6964610 |
taattgatttgaacaatttgcataatataaagataaaaaaggaatatattattatgctaggctatgatggaggaacttccaggagcgtttggaacaagcg |
6964709 |
T |
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| Q |
216 |
ctagcttaactcttcgtttgggacaaattgttttctcttctgcttctctttgtttcatgtgtttggatgttggtttctactcctacacttctttctcgta |
315 |
Q |
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| T |
6964710 |
ctagcttaactcttcgtttgggacaaattgttttctcttctgcttctctttgtttcatgtgtttggatgttggtttctactcctacacttctttctcgta |
6964809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 33585055 - 33584943
Alignment:
| Q |
182 |
atggaggaacttccaggagcgtttggaacaagcgctagcttaactcttcgtttgggacaaattgttttctcttctgcttctctttgtttcatgtgtttgg |
281 |
Q |
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||||||||| | ||||| | ||| ||||||||| | ||||| ||||| | ||||| |||| ||||| || ||||||||||||| ||||||||||||| |
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| T |
33585055 |
atggaggaattgccaggggtgttaggaacaagctccagctttgctcttagattgggccaaaccgttttttcctctgcttctcttttcttcatgtgtttgg |
33584956 |
T |
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| Q |
282 |
atgttggtttcta |
294 |
Q |
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| T |
33584955 |
atgttgatttcta |
33584943 |
T |
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