View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7989_low_7 (Length: 332)
Name: NF7989_low_7
Description: NF7989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7989_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 1271188 - 1271490
Alignment:
| Q |
13 |
aatatcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatcaatgcgatcagcttctcgtgctgctcctgcattttca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1271188 |
aatatcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatcaatgcgatcagcttctcgtgctgctccttcattttca |
1271287 |
T |
|
| Q |
113 |
cctctacaatcccaacttagtcattctagtccaaagtcagaacaaccagaacctcgtgtgccagtagtaactaaaggttagatttaatctcttcagtaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1271288 |
cctctacaatcccaacttagtcattctagtccaaagtcagaacaaccagaacctcgtgtgccagtcgtaactaaaggttagatttaatctcttcagtaat |
1271387 |
T |
|
| Q |
213 |
catgtac--nnnnnnnnnacatatttgtacatatatttttattatgtttctcattgagaaatgtgtttatattagcacctgagaggaagtcatttgaagg |
310 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1271388 |
catgtactttttttttttacatatttgtacatatatttttattatgtttctcattgagaaatgtgtttatattagcacctgagaggaagtcatttgaagg |
1271487 |
T |
|
| Q |
311 |
gca |
313 |
Q |
| |
|
||| |
|
|
| T |
1271488 |
gca |
1271490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 1257989 - 1258040
Alignment:
| Q |
24 |
gggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatc |
75 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
1257989 |
gggcaccagatttttgtacggtatatgttctttttaaaggaaaaattcaatc |
1258040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 50441988 - 50441903
Alignment:
| Q |
17 |
tcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatcaatgcgatcagcttctcgtgctgctcc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
50441988 |
tcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcgatgcgatctgcttctcgtcctgctcc |
50441903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 50446979 - 50446905
Alignment:
| Q |
17 |
tcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatcaatgcgatcagcttct |
91 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||| || ||||| ||||||||||||||| | |||||| |
|
|
| T |
50446979 |
tcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatcaatgcgacctgcttct |
50446905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University