View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7990_high_1 (Length: 640)
Name: NF7990_high_1
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7990_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 4 - 623
Target Start/End: Original strand, 26093831 - 26094452
Alignment:
| Q |
4 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
103 |
Q |
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||||| || |||||||||||| |||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| || ||||||||||||||||| |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
|
| Q |
104 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggta |
203 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26093931 |
tcaagttaatttttatttt-taactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggta |
26094029 |
T |
|
| Q |
204 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctttcccatttgagcatgctgcgaatgat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094030 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctttcccatttgagcatgctgcgaatgat |
26094129 |
T |
|
| Q |
304 |
tgttttagtgttccccatttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaattag---nnnnnnnncctcagtcataa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26094130 |
tgttttagtgttccccatttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaattagaaaaaaaaaaacctcagtcataa |
26094229 |
T |
|
| Q |
401 |
caaattatcagcatatcataacatgtaatttagtcttcacagattaagaaaaacaataatactcagttgtagaatgaaggaatgagaaaaatgtagcact |
500 |
Q |
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| T |
26094230 |
aaaattatcagcatatcataacatgtaatttagtcttcacagattaagaaaaacaataatactcagttgtagaatgaaggaatgagaaaaatgtagcact |
26094329 |
T |
|
| Q |
501 |
gaattaattttttgatattaagttatgaaaaatgcaaaatgaaatcgtaccatgatttgctgaagtgcatagagccaaagcagctatggaaaggattgag |
600 |
Q |
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| T |
26094330 |
gaattaattttttgatattaagttatgaaaaatgcaaaatgaaatcgtaccatgatttgctgaagtgcatagagccaaagcagctatggaaaggattgag |
26094429 |
T |
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| Q |
601 |
atgtaaatctgcaaggccattgt |
623 |
Q |
| |
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| T |
26094430 |
atgtaaatctgcaaggccattgt |
26094452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26074186 - 26074470
Alignment:
| Q |
1 |
aattatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttc |
100 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26074186 |
aattatcgtatcaaacatcaaacacgttttcatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtcttttt |
26074285 |
T |
|
| Q |
101 |
aattcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaag |
200 |
Q |
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| T |
26074286 |
aattcaagttaatttttattttttaactgatttgttagttgatgaaaatacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaag |
26074385 |
T |
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| Q |
201 |
gtagtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctttcccattt |
285 |
Q |
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| T |
26074386 |
gtagtttctgtctaaggatttcatatcctggttcatgacaacatctgttattacaagatccactggactctatgctttcccattt |
26074470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 120 - 376
Target Start/End: Original strand, 26105377 - 26105634
Alignment:
| Q |
120 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
218 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
|
| Q |
219 |
tttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccc |
318 |
Q |
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||||||| | | ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||| ||| | | || |||||| |
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| T |
26105477 |
tttcaattcctggttcatgacaatatctgtcattacaagatccactggactttgtgctttcccatttgaacatgccgcgaaagatggactcagagttccc |
26105576 |
T |
|
| Q |
319 |
catttcagaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaa |
376 |
Q |
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|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26105577 |
cacttctcaggaccatttggtccaatataactaaaattaaccgaatctagcataaaaa |
26105634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 523 - 621
Target Start/End: Original strand, 26105691 - 26105789
Alignment:
| Q |
523 |
ttatgaaaaatgcaaaatgaaatcgtaccatgatttgctgaagtgcatagagccaaagcagctatggaaaggattgagatgtaaatctgcaaggccatt |
621 |
Q |
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|||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||| |
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| T |
26105691 |
ttatgataaatgcaaaatgaaatcttactataatttgctgaagtgcatagagccaaagttgcaataaaaaggattgagaagtaaatctgcaaggccatt |
26105789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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