View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7990_low_1 (Length: 956)
Name: NF7990_low_1
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7990_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 440 - 942
Target Start/End: Original strand, 45540897 - 45541396
Alignment:
| Q |
440 |
atcaagattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
539 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45540897 |
atcaacattcagatgtagcagaacactccacgccaacttcgtctaatcaaaacatagaacaccacaaaattaaaggaccagagatacaaaacccgccgat |
45540996 |
T |
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| Q |
540 |
acaattgatggagcgtccaagtgaaaatgtgactaatgcccaatatgtctttccatctcatgtatttgctagaaacaatacaaatgccccagtagaatgg |
639 |
Q |
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| T |
45540997 |
acaattgatggagcgtccaagtgaaaatgtgactaatgcccaatatgtctttccatctcatgtatttgctagaaacaatacaaatgccccagtagaatgg |
45541096 |
T |
|
| Q |
640 |
agcactgcctctaacgaatcactcttcagcatttatatgggaaatacaagtttctcaagtgaactagcttgcttcaaatcttcttctgatttagataagt |
739 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45541097 |
agcactgcctctaacgaatcactcttcagcatttatatgggaaatacaagtttctcaagtgaactagcttgcttcaaa---tcttctgatttagataagt |
45541193 |
T |
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| Q |
740 |
ctggtgatgtatatatgtccgatcagcatattgcttcgccaaatcatcaacctccagtacctgtgaataaattcaacgctataagcaagggaactgccga |
839 |
Q |
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| T |
45541194 |
ctggtgatgtatgtatgtccgatcagtatattgcttcgccaaatcatcaacctccagtacctgtgaataaattcaacgctattagcaagggaactgccga |
45541293 |
T |
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| Q |
840 |
acttcacgaagaaggtttgaaggtaactgaagcaaaagctgctgagacaatgagagaggtcataatggagagtagtcaaactacaaagtatgttgttaaa |
939 |
Q |
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| T |
45541294 |
acttcacgaagaaggtttgaaggtaactgaagcaaaagctgctgagacaatgagagaggtcataatggagagtagtcaaactacaaagtatgttgttaaa |
45541393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 126 - 447
Target Start/End: Original strand, 45540505 - 45540826
Alignment:
| Q |
126 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
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| Q |
226 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
325 |
Q |
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| T |
45540605 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
45540704 |
T |
|
| Q |
326 |
aaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgt |
425 |
Q |
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| T |
45540705 |
aaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgt |
45540804 |
T |
|
| Q |
426 |
cacaggtaatgcaaatcaagat |
447 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
45540805 |
cacaagtaatgcaaatcaagat |
45540826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 45540355 - 45540468
Alignment:
| Q |
15 |
agacatcaaccaagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaacgacactgttgaggatgacaca |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45540355 |
agacatcaaccaagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaacgacactgttgaggatgacaca |
45540454 |
T |
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| Q |
115 |
aacattggtagttc |
128 |
Q |
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|||||||||||||| |
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| T |
45540455 |
aacattggtagttc |
45540468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 908
Target Start/End: Original strand, 7927458 - 7927504
Alignment:
| Q |
862 |
gtaactgaagcaaaagctgctgagacaatgagagaggtcataatgga |
908 |
Q |
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|||||||| | |||||||||||||||||||||| |||| |||||||| |
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| T |
7927458 |
gtaactgaggaaaaagctgctgagacaatgagacaggttataatgga |
7927504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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