View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7990_low_3 (Length: 459)
Name: NF7990_low_3
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7990_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Original strand, 40399065 - 40399503
Alignment:
| Q |
10 |
atgaaagattaacgtgtaattacggttgttatcattaaattatgtagttaatcactgttaattatgattagtctaaagacatcgatgtaataacgtagca |
109 |
Q |
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| T |
40399065 |
atgaaagattaacgtgtaattgcggttgttatcattaaattatgtagttaatcactgttaattatgattagtctaaagacatcgatgtaataacgtagca |
40399164 |
T |
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| Q |
110 |
a-gtgtacattttttaa-tgaaatagcttaatgttaaaaaattcagtaaataagcgaggagtcaggtttgaaccacaacccctgatatataaatgaaatg |
207 |
Q |
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| T |
40399165 |
aagtgtacatttttttagtgaaatagcttaatgttcaaaaattcagtaaataagcgaggagtcaggtttgaaccacagtccctgatatataaatgaaatg |
40399264 |
T |
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| Q |
208 |
tctttaccgattggttaaattgatacaatacgtttatttatacttttaataaataaaaacgataatatatt-----atact-aaattaacaatctttttc |
301 |
Q |
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| T |
40399265 |
tctttaccgattgattaaattgatataataagtttatttatacttttaataaataaaaacgataatatagtattacatactaaaattaacaatctttttc |
40399364 |
T |
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| Q |
302 |
cttgaaaacaaatttaaccttctccattgccatcgcctattgggccaacttatgtacacagnnnnnnnntatcttgtaaattttatatgattcatcataa |
401 |
Q |
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| T |
40399365 |
cttgaaaacaaatttaaccttctccattgccatcgcctattgggccaacttaagtacacagaaaaaaaatatcttgtaaattttatatgattcatcataa |
40399464 |
T |
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| Q |
402 |
caattaaaatttattttcccttggcaacttcgtgcagaa |
440 |
Q |
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| T |
40399465 |
caattaaaatttattttcccttggcaacttcgtgcagaa |
40399503 |
T |
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