View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7990_low_5 (Length: 369)

Name: NF7990_low_5
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7990_low_5
NF7990_low_5
[»] chr7 (10 HSPs)
chr7 (144-353)||(41877487-41877695)
chr7 (1-129)||(3535869-3535997)
chr7 (62-128)||(47096403-47096469)
chr7 (63-132)||(27855078-27855147)
chr7 (39-132)||(34871740-34871831)
chr7 (176-296)||(21586824-21586943)
chr7 (208-303)||(3105950-3106044)
chr7 (172-254)||(4089135-4089217)
chr7 (175-236)||(33329977-33330038)
chr7 (175-235)||(6803444-6803504)
[»] chr3 (16 HSPs)
chr3 (1-132)||(29542221-29542351)
chr3 (1-132)||(22534140-22534270)
chr3 (1-98)||(41878829-41878925)
chr3 (53-128)||(42806127-42806202)
chr3 (1-132)||(19979111-19979242)
chr3 (62-129)||(52733944-52734011)
chr3 (58-128)||(6926148-6926218)
chr3 (63-129)||(44109453-44109519)
chr3 (91-132)||(41879545-41879586)
chr3 (58-132)||(53876709-53876785)
chr3 (72-129)||(3694563-3694622)
chr3 (82-130)||(6894407-6894455)
chr3 (204-274)||(4181969-4182039)
chr3 (195-296)||(334694-334794)
chr3 (175-296)||(10872681-10872801)
chr3 (175-235)||(40639866-40639926)
[»] chr1 (15 HSPs)
chr1 (1-132)||(28441978-28442108)
chr1 (53-132)||(28400681-28400760)
chr1 (58-132)||(48973842-48973916)
chr1 (63-135)||(45718528-45718600)
chr1 (175-302)||(34953905-34954031)
chr1 (63-129)||(2653561-2653628)
chr1 (195-274)||(1597221-1597300)
chr1 (69-128)||(5411941-5412000)
chr1 (227-296)||(39617319-39617387)
chr1 (63-129)||(52251538-52251606)
chr1 (72-128)||(50039848-50039904)
chr1 (175-254)||(14891790-14891869)
chr1 (188-302)||(1597211-1597324)
chr1 (187-296)||(14891759-14891867)
chr1 (186-235)||(41007697-41007746)
[»] chr6 (13 HSPs)
chr6 (1-132)||(11298426-11298556)
chr6 (1-121)||(29321169-29321288)
chr6 (66-128)||(2343077-2343139)
chr6 (63-130)||(32532903-32532970)
chr6 (72-129)||(15117090-15117147)
chr6 (72-129)||(2189510-2189569)
chr6 (175-296)||(8449583-8449705)
chr6 (175-296)||(8458387-8458509)
chr6 (186-238)||(1875033-1875085)
chr6 (186-274)||(7158276-7158364)
chr6 (186-302)||(10258324-10258439)
chr6 (198-238)||(16120997-16121037)
chr6 (176-268)||(20704033-20704125)
[»] chr8 (15 HSPs)
chr8 (1-132)||(7178864-7178994)
chr8 (61-132)||(41733433-41733504)
chr8 (39-132)||(16489294-16489385)
chr8 (58-132)||(39896099-39896173)
chr8 (53-128)||(25642409-25642483)
chr8 (63-130)||(41254879-41254946)
chr8 (175-274)||(13964428-13964527)
chr8 (66-129)||(38233386-38233449)
chr8 (66-129)||(42715359-42715422)
chr8 (59-129)||(43776410-43776482)
chr8 (175-238)||(45045445-45045508)
chr8 (198-274)||(8688347-8688420)
chr8 (84-130)||(10617119-10617165)
chr8 (63-128)||(32988356-32988421)
chr8 (187-235)||(36309929-36309977)
[»] chr5 (8 HSPs)
chr5 (58-132)||(21042140-21042214)
chr5 (67-132)||(32017821-32017886)
chr5 (72-130)||(34177909-34177969)
chr5 (72-130)||(12564749-12564807)
chr5 (72-129)||(7465417-7465474)
chr5 (72-132)||(16143499-16143559)
chr5 (175-221)||(32398088-32398134)
chr5 (198-254)||(31927088-31927144)
[»] chr4 (16 HSPs)
chr4 (62-129)||(11131023-11131090)
chr4 (58-132)||(54870642-54870716)
chr4 (63-130)||(42790527-42790594)
chr4 (63-128)||(10552833-10552898)
chr4 (63-129)||(45637624-45637691)
chr4 (68-136)||(44381510-44381578)
chr4 (194-305)||(19596000-19596110)
chr4 (175-221)||(38539487-38539533)
chr4 (63-129)||(8815547-8815615)
chr4 (72-129)||(18922116-18922173)
chr4 (175-248)||(24798185-24798258)
chr4 (175-303)||(32599489-32599616)
chr4 (205-268)||(4727291-4727354)
chr4 (177-303)||(38949686-38949811)
chr4 (197-274)||(3511741-3511818)
chr4 (195-296)||(10572750-10572851)
[»] chr2 (9 HSPs)
chr2 (58-132)||(36590946-36591020)
chr2 (63-130)||(841385-841452)
chr2 (66-132)||(24740016-24740082)
chr2 (173-248)||(19951503-19951578)
chr2 (175-238)||(44868521-44868584)
chr2 (72-129)||(1997535-1997592)
chr2 (197-302)||(44089431-44089535)
chr2 (186-254)||(8383205-8383273)
chr2 (172-224)||(26836237-26836289)
[»] scaffold0026 (1 HSPs)
scaffold0026 (173-274)||(88888-88987)
[»] scaffold0777 (1 HSPs)
scaffold0777 (72-130)||(1086-1146)
[»] scaffold0225 (1 HSPs)
scaffold0225 (54-136)||(6694-6778)
[»] scaffold0036 (1 HSPs)
scaffold0036 (186-254)||(89650-89718)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 144 - 353
Target Start/End: Complemental strand, 41877695 - 41877487
Alignment:
Q  144 caatactctacatctattctcaccactcgttactattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagat 243  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  41877695 caatactctacatctactatcaccactagttactattatattcaaaaatctatattttaaatttattcgataaatgatt-acatgatctatattagagat 41877597  T
Q  244 catattcatcactcattcaataaatctaaaagattacatttttacttataatattgatcaaatatgtatacttcaacttggcaaatccagtaaaattcaa 343  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41877596 catattcatcactcattcaataaatctaaaaaattacattttcacttataatattgatcaaatatgtatacttcaacttggcaaatacagtaaaattcaa 41877497  T
Q  344 atttcttctt 353  Q
    ||||||||||    
T  41877496 atttcttctt 41877487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 3535869 - 3535997
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaa-ggtttttattcctttgcacaccttgtgctaggaagg 99  Q
    ||||||||||||| ||||||| |||||  | |  |||||||| ||| |||||   |||||||| ||||||||||||||||||||||||||| ||||||||    
T  3535869 agctgttttgtggcgcttgcttttgtttctttg-taaatttcgtactttgtatcattttttaatggtttttattcctttgcacaccttgtgttaggaagg 3535967  T
Q  100 cctttgttgtggtaatatatctcattttag 129  Q
    ||||| |||||||||||||| || ||||||    
T  3535968 cctttattgtggtaatatatttcgttttag 3535997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 47096403 - 47096469
Alignment:
Q  62 aaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||    
T  47096403 aaggtttttattcctttgcacaccttgtgctaggaagacctttatggtggtaatatatttcatttta 47096469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 27855078 - 27855147
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||  ||||||||||||    
T  27855078 aggtttttattccttggcacaccttgtgctaggaagaccttagttgtggtaatataattcattttagttt 27855147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 34871740 - 34871831
Alignment:
Q  39 tttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||||||| ||||| | ||| |||||| ||||||||||||| ||||||| ||||||||||| | || |||||||||||||||||||||||||||    
T  34871740 tttcatactttgtatt-tttgttaaggcttttattcctttgtacaccttatgctaggaaggtc-ttattgtggtaatatatctcattttagttt 34871831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 21586824 - 21586943
Alignment:
Q  176 ctattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaag 275  Q
    ||||||||  |||||||| |||||||| ||| ||| | | |||||| ||  ||||||||| || ||||||||| ||||| | ||| ||| |||||||||     
T  21586824 ctattataaacaaaaatcaatattttagattcatttattcaatgatgtatgtggtctataataaagatcatatacatcattaattgaatgaatctaaaat 21586923  T
Q  276 attacatttttacttataata 296  Q
    |||  ||||||||||||||||    
T  21586924 attg-atttttacttataata 21586943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 3106044 - 3105950
Alignment:
Q  208 attcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttataatattgatca 303  Q
    |||||||||||||| ||  ||||||||||||  | |||||| || ||||||||||||||| |||||| | ||  ||||| ||||||||| ||||||    
T  3106044 attcaataaatgatgtatgtggtctatattaatggtcatatacaacactcattcaataaacctaaaa-aataattttttgcttataatagtgatca 3105950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 4089135 - 4089217
Alignment:
Q  172 gttactattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatca 254  Q
    ||||||||||||  |||||||| |||||||| ||| ||||| |||||||| || ||| |||||| || ||| ||||| |||||    
T  4089135 gttactattataaacaaaaatcaatattttatattcattcattaaatgatgtatatgttctataataaagaccatatacatca 4089217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 33329977 - 33330038
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatat 236  Q
    |||||||||  ||||||||||| ||| ||||||||| |||||||||| || ||| |||||||    
T  33329977 actattataagcaaaaatctatctttaaaatttatttaataaatgatataaatgatctatat 33330038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 6803504 - 6803444
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctata 235  Q
    |||||||||  |||||||| |||||||||||| |||||||  ||||| || ||||||||||    
T  6803504 actattataaacaaaaatcaatattttaaattcattcaattgatgatgtatatggtctata 6803444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 29542351 - 29542221
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |    
T  29542351 agctgttttgtggtgcttgctcttgttgttcttgtaaatttcataccttgta-tcttttttagggtttttattcctttgcacaccttgtgctaggaagtc 29542253  T
Q  101 ctttgttgtggtaatatatctcattttagttt 132  Q
    |||||||||| |||||||||||||||||||||    
T  29542252 ctttgttgtgctaatatatctcattttagttt 29542221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22534140 - 22534270
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    |||||| |||||||||||||| ||||  ||||  |||||| ||||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22534140 agctgtgttgtggtgcttgctattgtgattcttgtaaattccatattttgta-tcttttttaaggcttttattcctttgcacaccttgtgctaggaaggc 22534238  T
Q  101 ctttgttgtggtaatatatctcattttagttt 132  Q
    ||||||||||||||||||||||||||||||||    
T  22534239 ctttgttgtggtaatatatctcattttagttt 22534270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41878829 - 41878925
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaag 98  Q
    |||||| |||||||||||||| ||||||||||  |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  41878829 agctgtgttgtggtgcttgctattgttgttcttgtaaatttcatactttgta-tcttttttaaggcttttattcctttgcacaccttgtgctaggaag 41878925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 42806202 - 42806127
Alignment:
Q  53 atcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42806202 atctttgttaaggcttttattcctttgcacgccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 42806127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19979242 - 19979111
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    ||||||||||||||||||||||||||  | ||  |||| ||| ||| ||||| || | ||| ||||| ||||||||| ||||||||||||||||||||||    
T  19979242 agctgttttgtggtgcttgctcttgtattccttgtaaaattcgtactttgta-tcatctttgaggttattattccttcgcacaccttgtgctaggaaggc 19979144  T
Q  101 ctttg-ttgtggtaatatatctcattttagttt 132  Q
    ||||| ||||| |||||||| ||||||||||||    
T  19979143 ctttgtttgtgttaatatatttcattttagttt 19979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 52734011 - 52733944
Alignment:
Q  62 aaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  52734011 aaggtttttattcctttgcacaccttgtgctaggaagacctttattgtggtaatatatttcattttag 52733944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 6926148 - 6926218
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    |||| ||||||||||||||||||||||||||||||||||||||||  | |||| |||||||| ||||||||    
T  6926148 ttttgaggtttttattcctttgcacaccttgtgctaggaaggcctcaggtgtgttaatatatttcatttta 6926218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 44109453 - 44109519
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  44109453 aggtttttattccttgtcacaccttgtgctaggaaggtctttgttgtgttaatatatttcattttag 44109519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 41879545 - 41879586
Alignment:
Q  91 ctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41879545 ctaggaaggcctttgttgtggtaatatatctcattttagttt 41879586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 53876785 - 53876709
Alignment:
Q  58 ttttaaggtttttattcctttgcaca--ccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||  | |||| |||||||| ||||||||||||    
T  53876785 ttttgaggtttttattcctttgcacaaaccttgtgctaggaaggcctcaggtgtgttaatatatttcattttagttt 53876709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 3694622 - 3694563
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcct--ttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||||||||||||||| |||  ||| ||||||||||||| |||||||||    
T  3694622 ttccttagcacaccttgtgctaggaagaccttattgatgtggtaatatatttcattttag 3694563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 6894407 - 6894455
Alignment:
Q  82 caccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    ||||||| || |||||| ||| |||||||||||||||||||||||||||    
T  6894407 caccttgagccaggaagccctatgttgtggtaatatatctcattttagt 6894455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 4181969 - 4182039
Alignment:
Q  204 atttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    ||||||||||| |||||| ||  ||||||||| || ||||||||| ||||| | ||| |||||||||||||    
T  4181969 atttattcaattaatgatgtatgtggtctataatatagatcatatacatcattgattgaataaatctaaaa 4182039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 334694 - 334794
Alignment:
Q  195 atattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttataa 294  Q
    |||||||||||| |||||||||||||| || |||||||||| || |||  | || ||||| | ||||||| ||||| |||| | | |||||| |||||||    
T  334694 atattttaaattaattcaataaatgatatatatggtctataataaagactacatacatcattaattcaatgaatcttaaaggtaaaattttt-cttataa 334792  T
Q  295 ta 296  Q
    ||    
T  334793 ta 334794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 10872681 - 10872801
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||  |||||||| |||||||||||| ||||| |||||||| ||  || | |||| || ||| ||||| ||||| | ||| ||| |||||||||    
T  10872681 actattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtgatttataataaagaccatatacatcattaattgaatgaatctaaaa 10872780  T
Q  275 gattacatttttacttataata 296  Q
     | || |||||| |||||||||    
T  10872781 ta-taaatttttgcttataata 10872801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 40639926 - 40639866
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctata 235  Q
    |||||||||  |||||||| | |||||||||||||||| |||||||| ||  |||||||||    
T  40639926 actattataagcaaaaatcaacattttaaatttattcattaaatgatgtatgtggtctata 40639866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28442108 - 28441978
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    |||||| || ||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  28442108 agctgtgttatggtgcttgctcttgttgttcttgtaaatttcataccttgta-tcttttttaaggtttttattcatttgcacaccttgtgctaggaaggc 28442010  T
Q  101 ctttgttgtggtaatatatctcattttagttt 132  Q
    ||||||||||||||||||||||||||||||||    
T  28442009 ctttgttgtggtaatatatctcattttagttt 28441978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 28400681 - 28400760
Alignment:
Q  53 atcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28400681 atctttgttaaggcttttattcctttgcacgccttgtgctaggaaggcctttgttgtggtattatatctcattttagttt 28400760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 48973842 - 48973916
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||    
T  48973842 ttttgaggtttttattcctttgcacaccttgtgctaggaaggccttaggtgtgttaatatatttcattttagttt 48973916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 45718528 - 45718600
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagtttttt 135  Q
    |||||||||||||||  |||||||| ||||| |||||| ||||||||| |||||||| |||||||||| ||||    
T  45718528 aggtttttattccttgacacaccttatgctaagaaggcatttgttgtgttaatatatttcattttagtctttt 45718600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 34953905 - 34954031
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||  |||||||| |||||||||||| ||||| |||||||| ||  ||||||||| || ||| ||||| ||||| | ||| ||| |||||||||    
T  34953905 actattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaatgaatctaaaa 34954004  T
Q  275 gattacatttttacttataatattgatc 302  Q
     | || |||||| ||||||||| |||||    
T  34954005 ta-taaatttttgcttataatagtgatc 34954031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 2653628 - 2653561
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcct--ttgttgtggtaatatatctcattttag 129  Q
    |||| ||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  2653628 aggtgtttcttccttagcacaccttgtgctaggaaggcctgattgttgtggtaatatat-tcattttag 2653561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 1597300 - 1597221
Alignment:
Q  195 atattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||||||||||| |||||||| || |||||| ||| || ||||||||| ||||| | ||| ||||||| |||||    
T  1597300 atattttaaatttattcattaaatgatatatatggtcgataataaagatcatatacatcattaattgaataaatttaaaa 1597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 5411941 - 5412000
Alignment:
Q  69 ttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    ||||||||| |||||||||||||||||||||  ||||| ||| |||||||| ||||||||    
T  5411941 ttattccttggcacaccttgtgctaggaaggtttttgtcgtgttaatatatttcatttta 5412000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 39617387 - 39617319
Alignment:
Q  227 tggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttataata 296  Q
    ||||||||||||  ||||| || ||||||||||||||||||||||||| | ||  |||||||||||||||    
T  39617387 tggtctatattaatgatcacatacatcactcattcaataaatctaaaa-agtagttttttacttataata 39617319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 52251538 - 52251606
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcc--tttgttgtggtaatatatctcattttag 129  Q
    |||| ||| |||||| |||| ||||||||||||||||||  |||||||||| ||||||| |||||||||    
T  52251538 aggtgtttcttccttagcactccttgtgctaggaaggccgttttgttgtgggaatatatttcattttag 52251606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 50039848 - 50039904
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    |||||| |||||||| |||||||||||||  |||||||| |||||||| ||||||||    
T  50039848 ttccttagcacacctagtgctaggaaggcgattgttgtgttaatatatttcatttta 50039904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 14891869 - 14891790
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatca 254  Q
    |||||||||  ||||||| || |||||| |||||| ||||||||||| || ||||||| ||||| ||| ||||| |||||    
T  14891869 actattataagcaaaaatttaaattttagatttatccaataaatgatgtatatggtctttattatagaccatatacatca 14891790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 1597211 - 1597324
Alignment:
Q  188 aaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacattttta 287  Q
    ||||| || |||||||||||||||||| |||||| || ||| ||| |||||  || |||||  |||| | | | ||||||| ||||| |||| |||||||    
T  1597211 aaaatatacattttaaatttattcaattaatgatgtatatgatctttattatcgaccatatatatcatttaatgaataaatttaaaatatta-attttta 1597309  T
Q  288 cttataatattgatc 302  Q
    ||||||||| |||||    
T  1597310 cttataataatgatc 1597324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 14891759 - 14891867
Alignment:
Q  187 aaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacattttt 286  Q
    ||||||| |||||||||  | ||||| |||||||| || |||||||||| || ||| ||||| ||||| | |||  ||||||||||||  ||| ||||||    
T  14891759 aaaaatcaatattttaagatcattcattaaatgatgtatatggtctataataaagaccatatacatcatttattggataaatctaaaa-tttaaattttt 14891857  T
Q  287 acttataata 296  Q
     |||||||||    
T  14891858 gcttataata 14891867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 41007697 - 41007746
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctata 235  Q
    |||||||| |||||||||||||||||| |||||||| ||  |||||||||    
T  41007697 caaaaatcaatattttaaatttattcattaaatgatgtatgtggtctata 41007746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 11298556 - 11298426
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    ||||||||||||||||||||||||||| ||||  |||| ||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||     
T  11298556 agctgttttgtggtgcttgctcttgtttttcttgtaaagttcgtactttgta-tcttttctaaggttattattcctttgcacaccttgtgctaggaaggt 11298458  T
Q  101 ctttgttgtggtaatatatctcattttagttt 132  Q
    |||||||||| | |||||||||||||||||||    
T  11298457 ctttgttgtgtttatatatctcattttagttt 11298426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29321288 - 29321169
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    ||||||||||||||||||||||||||| ||||  |||| ||| ||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |    
T  29321288 agctgttttgtggtgcttgctcttgtttttcttgtaaagttcgtactttgta-tcttttctaaggttattattcctttgcacaccttgtgctaggaagac 29321190  T
Q  101 ctttgttgtggtaatatatct 121  Q
    |||||||||| ||||||||||    
T  29321189 ctttgttgtgttaatatatct 29321169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 2343077 - 2343139
Alignment:
Q  66 tttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||||    
T  2343077 tttttattcctttgcacaccttatgctagaaaggcctttgatgtggtaatatatttcatttta 2343139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 32532970 - 32532903
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    ||||||||||||||| |||| ||||||||||||||| |||| || |||||||||||  ||||||||||    
T  32532970 aggtttttattccttggcacgccttgtgctaggaagaccttcgtagtggtaatataattcattttagt 32532903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 15117147 - 15117090
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||| ||||||||||||||  ||||||| |||||||| |||||||||    
T  15117147 ttccttagcacacctagtgctaggaaggccaatgttgtgttaatatatttcattttag 15117090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 2189569 - 2189510
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcct--ttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||||||||||||||| |||  ||| ||||||||||||| |||||||||    
T  2189569 ttccttagcacaccttgtgctaggaagaccttgttgatgtggtaatatatttcattttag 2189510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 8449583 - 8449705
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatat--tagagatcatattcatcactcattcaataaatctaa 272  Q
    |||||||||  |||||||  |||||||  |||||||||||||||||| ||  ||||||||||  |  ||||||||| ||||| | ||| ||| |||||||    
T  8449583 actattataagcaaaaattaatattttggatttattcaataaatgatgtatgtggtctatataatcaagatcatatgcatcattaattgaatgaatctaa 8449682  T
Q  273 aagattacatttttacttataata 296  Q
    || |||| |||||| |||||||||    
T  8449683 aatatta-atttttgcttataata 8449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 8458387 - 8458509
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatat--tagagatcatattcatcactcattcaataaatctaa 272  Q
    |||||||||  |||||||  |||||||  |||||||||||||||||| ||  ||||||||||  |  ||||||||| ||||| | ||| ||| |||||||    
T  8458387 actattataagcaaaaattaatattttggatttattcaataaatgatgtatgtggtctatataatcaagatcatatgcatcattaattgaatgaatctaa 8458486  T
Q  273 aagattacatttttacttataata 296  Q
    || |||| |||||| |||||||||    
T  8458487 aatatta-atttttgcttataata 8458509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 1875085 - 1875033
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctatatta 238  Q
    |||||||| | |||||| |||||||||||||||||| || ||||| |||||||    
T  1875085 caaaaatcaacattttagatttattcaataaatgatatatatggtttatatta 1875033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 7158276 - 7158364
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    ||||||||||| ||||| |||||||||||||||||| ||  |||||| ||||  |||  |||| ||||| | ||| ||| |||||||||    
T  7158276 caaaaatctatgttttagatttattcaataaatgatgtatgtggtctttattgtagacaatatacatcatttattgaatgaatctaaaa 7158364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 10258324 - 10258439
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttt 285  Q
    |||||||| | |||||| ||| ||| | |||||||| ||||||||||||| ||  || ||||| ||||| | ||| ||| |||||||||  |||  ||||    
T  10258324 caaaaatcaacattttagattcatttattaaatgatgtacatggtctataataatgaccatatacatcattaattgaatgaatctaaaaagtta-ttttt 10258422  T
Q  286 tacttataatattgatc 302  Q
    ||||||||||| |||||    
T  10258423 tacttataataatgatc 10258439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 16120997 - 16121037
Alignment:
Q  198 ttttaaatttattcaataaatgatttacatggtctatatta 238  Q
    ||||||||| |||||||||||||| ||| ||||||||||||    
T  16120997 ttttaaattcattcaataaatgatgtacttggtctatatta 16121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 20704033 - 20704125
Alignment:
Q  176 ctattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaat 268  Q
    |||||||| ||||||||| |||||||||||| ||||| | ||| || ||  ||||||||| || ||| ||||| ||||| | ||| |||||||    
T  20704033 ctattataatcaaaaatcaatattttaaattcattcattcaataatatatgtggtctataataaagaccatatacatcattaattgaataaat 20704125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7178994 - 7178864
Alignment:
Q  1 agctgttttgtggtgcttgctcttgttgttctcataaatttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggc 100  Q
    ||||||||||||||||||||||||||  | ||  |||| ||| ||| ||||| || | ||||||||| ||||||||| ||||||||||||||||||||||    
T  7178994 agctgttttgtggtgcttgctcttgtattccttgtaaaattcgtactttgta-tcatctttaaggttattattccttcgcacaccttgtgctaggaaggc 7178896  T
Q  101 ctttgttgtggtaatatatctcattttagttt 132  Q
    |||||||||| |||||||| ||||||||||||    
T  7178895 ctttgttgtgttaatatatttcattttagttt 7178864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 41733504 - 41733433
Alignment:
Q  61 taaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41733504 taaggcttttattcctttgcacatcttgtactaggaaggcctttgttgtggtaatatatctcattttagttt 41733433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 16489385 - 16489294
Alignment:
Q  39 tttcataccttgtaatcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||||||| ||||| | ||| |||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  16489385 tttcatactttgtatt-tttgttaaggcttttattcctttgtacaccttgtgctaggaaggcc-ttattgtggtaatatatctcattttagttt 16489294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 39896173 - 39896099
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||  | |||| |||||||| ||||||||||||    
T  39896173 ttttgaggtttttattcctttacacaccttatgctaggaaggcctcaggtgtgttaatatatttcattttagttt 39896099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 25642483 - 25642409
Alignment:
Q  53 atcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    |||||| |||||| ||||||||||||| |||| ||||||||||||||||| | ||||| |||||||| ||||||||    
T  25642483 atctttgttaaggcttttattcctttgtacacattgtgctaggaaggcctgt-ttgtgataatatatatcatttta 25642409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 41254946 - 41254879
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    |||||||||||| ||  ||||||||||||||||||| |||| ||||||||||||||  ||||||||||    
T  41254946 aggtttttattctttgacacaccttgtgctaggaagaccttcgttgtggtaatataattcattttagt 41254879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 13964428 - 13964527
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||  |||||||| | |||||||||| |||||||||||||| ||  |||||||||||| ||| ||| | ||||| | | ||||| |||||||||    
T  13964428 actattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaatgaatctaaaa 13964527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 38233386 - 38233449
Alignment:
Q  66 tttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    ||||| |||||| |||||||| ||||||||||||||  ||||||| |||||||| |||||||||    
T  38233386 tttttcttccttagcacacctagtgctaggaaggccaatgttgtgttaatatatttcattttag 38233449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 42715359 - 42715422
Alignment:
Q  66 tttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||||||||| | ||||||||||||||||||||| |||| ||| || ||||| |||||||||    
T  42715359 tttttattccttggtacaccttgtgctaggaaggcccttgtggtgttattatatttcattttag 42715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 43776410 - 43776482
Alignment:
Q  59 tttaaggtttttattcctttgcacaccttgtgctaggaaggcc--tttgttgtggtaatatatctcattttag 129  Q
    |||| ||| ||| |||||| | |||||||||||||||||||||  |||||||||||||||||  |||||||||    
T  43776410 tttatggtgtttcttccttagtacaccttgtgctaggaaggccattttgttgtggtaatataattcattttag 43776482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 45045508 - 45045445
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatatta 238  Q
    |||||||||  ||||||||||||||||| ||| ||||||| |||||| || ||||||| |||||    
T  45045508 actattataaacaaaaatctatattttagattcattcaattaatgatgtatatggtctttatta 45045445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 8688347 - 8688420
Alignment:
Q  198 ttttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    ||||||||||||| ||||||||  ||   ||| |||||||| |||||| || ||||||| |||||||||||||||||    
T  8688347 ttttaaatttattgaataaatgtatt---tggcctatattatagatcaaatacatcacttattcaataaatctaaaa 8688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 10617119 - 10617165
Alignment:
Q  84 ccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    |||||||||||||||||| |||||||| |||||||  ||||||||||    
T  10617119 ccttgtgctaggaaggccattgttgtgttaatataattcattttagt 10617165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 32988421 - 32988356
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    ||||||||||||||| |||  ||||||||||||||| |||| |||| | |||||||  ||||||||    
T  32988421 aggtttttattccttggcatgccttgtgctaggaagaccttcgttgcgataatataattcatttta 32988356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 36309977 - 36309929
Alignment:
Q  187 aaaaatctatattttaaatttattcaataaatgatttacatggtctata 235  Q
    ||||||| | |||||||||| ||||||||||| || |||||||||||||    
T  36309977 aaaaatcaacattttaaattcattcaataaataatctacatggtctata 36309929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 21042140 - 21042214
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||    
T  21042140 ttttgaggtttttattcctttgcacaccttgtgctaggaaggccttaggtgtgttaatatatttcattttagttt 21042214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 32017886 - 32017821
Alignment:
Q  67 ttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| |||||| |||| ||||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  32017886 tttttttccttggcacgccttgtgctaggaagaccttttttgtggttatatatttcattttagttt 32017821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 34177909 - 34177969
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggccttt--gttgtggtaatatatctcattttagt 130  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||||||  ||||||||||    
T  34177909 ttccttagcacaccttgtgctaggaaggccttttcgttgtggtaatatacttcattttagt 34177969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 12564807 - 12564749
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    |||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||    
T  12564807 ttccttagcacacctagtgctaggaagaccattgttgtgttaatatatttcattttagt 12564749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 7465417 - 7465474
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||| ||||||||||||||  ||||||| |||||||| |||||||||    
T  7465417 ttccttagcacacctagtgctaggaaggccaatgttgtgttaatatatttcattttag 7465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 16143559 - 16143499
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||||| |||||||| ||||||||||||||  |||| || |||||||| ||||||||||||    
T  16143559 ttccttagcacacctagtgctaggaaggccaatgttatgttaatatatttcattttagttt 16143499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 32398134 - 32398088
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgat 221  Q
    |||||||||  ||||||||||||||||||||| ||||||| ||||||    
T  32398134 actattataaacaaaaatctatattttaaattcattcaattaatgat 32398088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 31927144 - 31927088
Alignment:
Q  198 ttttaaatttattcaataaatgatttacatggtctatattagagatcatattcatca 254  Q
    ||||| ||| |||||||||||||| ||||||||||| | || ||||||||| |||||    
T  31927144 ttttagattcattcaataaatgatgtacatggtctacaatatagatcatatacatca 31927088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 11131090 - 11131023
Alignment:
Q  62 aaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||    
T  11131090 aaggtttttattcctttgcacaccttgtgctaggaagacctttattgtggtaacatatttcattttag 11131023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 54870716 - 54870642
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| |||||||||||||||||||||||||||||||||||| |||  | |||| |||||||| ||||||||||||    
T  54870716 ttttgaggtttttattcctttgcacaccttgtgctaggaagacctcgggtgtgttaatatatttcattttagttt 54870642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 42790527 - 42790594
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    ||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||  ||||||||||    
T  42790527 aggtttttattccttggcacgccttgtgctaggaagaccttcgttgtggtaatataattcattttagt 42790594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 10552833 - 10552898
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcatttta 128  Q
    ||||||||||||||| |||| ||||||||||||||  |||| ||||||||||||||  ||||||||    
T  10552833 aggtttttattccttggcacgccttgtgctaggaaaaccttcgttgtggtaatataattcatttta 10552898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 45637624 - 45637691
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcct--ttgttgtggtaatatatctcattttag 129  Q
    |||| ||| |||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  45637624 aggtgtttcttccttagcacaccttgtgctaggaaggcctgattgttgtggtaatatat-tcattttag 45637691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 44381510 - 44381578
Alignment:
Q  68 tttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttttttc 136  Q
    |||||||||||||||| |||||||||| ||||| |  | |||| |||||||| ||||||||||||||||    
T  44381510 tttattcctttgcacatcttgtgctagaaaggcatcaggtgtgttaatatatttcattttagttttttc 44381578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 19596110 - 19596000
Alignment:
Q  194 tatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttata 293  Q
    ||||||||||||| |||||||||||||| || ||| ||||||||| | |||| || ||||| | ||| ||| || |||||| || | |||||||||||||    
T  19596110 tatattttaaattcattcaataaatgatatatatgatctatattaaaaatcaaatacatcatttattaaatgaacctaaaatatca-atttttacttata 19596012  T
Q  294 atattgatcaaa 305  Q
    ||| | ||||||    
T  19596011 atagtaatcaaa 19596000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 38539487 - 38539533
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgat 221  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  38539487 actattataagcaaaaatttatattttaaatttattcaataaatgat 38539533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 8815547 - 8815615
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcc--tttgttgtggtaatatatctcattttag 129  Q
    |||| ||| |||||| |||| ||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  8815547 aggtgtttcttccttagcactccttgtgctaggaaggcctatttgttatggtaatatatttcattttag 8815615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 18922116 - 18922173
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||| ||||||||||||||  ||||||| |||||||| |||||||||    
T  18922116 ttccttagcacacctagtgctaggaaggccaatgttgtgttaatatatttcattttag 18922173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 24798258 - 24798185
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatat 248  Q
    |||||||||  |||||||  |||||||||||| ||||| |||||||| ||| ||||||||| || |||||||||    
T  24798258 actattataagcaaaaattaatattttaaattcattcattaaatgatgtacgtggtctataataaagatcatat 24798185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 32599489 - 32599616
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||  |||||| |||||||||| ||||||| ||| ||| || || ||||||| ||||| | | || || ||||| | | | ||| |||||||||    
T  32599489 actattataaacaaaaaactatattttatatttattaaattaattatgtatatggtctttattataaaccacatacatcatttaataaatgaatctaaaa 32599588  T
Q  275 gattacatttttacttataatattgatca 303  Q
     |||| |||||||||||||||| ||||||    
T  32599589 tatta-atttttacttataatagtgatca 32599616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 4727354 - 4727291
Alignment:
Q  205 tttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaat 268  Q
    |||||||||||||| || |||  ||||||||||| |||||| || ||||||| |||||||||||    
T  4727354 tttattcaataaattatgtacgcggtctatattatagatcacatacatcacttattcaataaat 4727291  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 303
Target Start/End: Complemental strand, 38949811 - 38949686
Alignment:
Q  177 tattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaaga 276  Q
    ||||||||  |||||  ||| |||||||||||||||||||||||| ||  | |||||||||| || |||| | ||||| | ||| ||| ||| ||||| |    
T  38949811 tattatatgaaaaaaagtattttttaaatttattcaataaatgatgtatgtagtctatattatagttcatttacatcatttattgaattaatttaaaata 38949712  T
Q  277 ttacatttttacttataatattgatca 303  Q
    ||| ||||||  |||||||| ||||||    
T  38949711 tta-attttttattataataatgatca 38949686  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 3511818 - 3511741
Alignment:
Q  197 attttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaa 274  Q
    |||||||||||||||| ||||||||  |  ||||||||| || ||||||||| ||||| | ||| ||| |||||||||    
T  3511818 attttaaatttattcattaaatgatgaatgtggtctataataaagatcatatacatcattaattgaatgaatctaaaa 3511741  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 10572750 - 10572851
Alignment:
Q  195 atattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttataa 294  Q
    |||||||| ||| ||||| | |||||| ||  ||||||||| || ||||||||| ||||| | ||| |||||||||| || || |  |||||||||||||    
T  10572750 atattttagattcattcattgaatgatgtatgtggtctataataaagatcatatacatcattaattgaataaatctataatataagttttttacttataa 10572849  T
Q  295 ta 296  Q
    ||    
T  10572850 ta 10572851  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 36590946 - 36591020
Alignment:
Q  58 ttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    |||| ||||| |||||| |||||||||||| ||||||||| ||||||| |||| |||||||| ||||||||||||    
T  36590946 ttttgaggttattattcttttgcacaccttatgctaggaatgcctttggtgtgttaatatatttcattttagttt 36591020  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 841452 - 841385
Alignment:
Q  63 aggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagt 130  Q
    ||||||||||||| |  ||| ||||||||||||||| |||| ||||||||||||||  ||||||||||    
T  841452 aggtttttattccctgacacgccttgtgctaggaagaccttcgttgtggtaatataattcattttagt 841385  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 24740016 - 24740082
Alignment:
Q  66 tttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttagttt 132  Q
    ||||||||| || |||| ||||||||||| ||| ||||| |||||||||||||  ||||||||||||    
T  24740016 tttttattcattggcacgccttgtgctagaaagacctttcttgtggtaatataattcattttagttt 24740082  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 19951578 - 19951503
Alignment:
Q  173 ttactattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatat 248  Q
    |||||||||||  |||||||| |||||||| ||| ||||||| |||||| || ||| ||| ||||| |||||||||    
T  19951578 ttactattataaacaaaaatcaatattttatattcattcaattaatgatgtatatgctctttattatagatcatat 19951503  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 44868521 - 44868584
Alignment:
Q  175 actattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatatta 238  Q
    |||||||||  |||||||| | |||||||||||||||||| |||| | ||| ||||||||||||    
T  44868521 actattataaacaaaaatcaacattttaaatttattcaattaatgttgtacgtggtctatatta 44868584  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 1997592 - 1997535
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatatctcattttag 129  Q
    |||||| |||||||| ||||||||||||||   |||||| |||||||| |||||||||    
T  1997592 ttccttagcacacctagtgctaggaaggccaaagttgtgttaatatatttcattttag 1997535  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 44089535 - 44089431
Alignment:
Q  197 attttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaaaagattacatttttacttataata 296  Q
    |||||||||| |||||||| ||||| ||  |||||||||||| ||| ||| | ||||| | ||||||| ||| ||||||| |  |||||| |||||||||    
T  44089535 attttaaattcattcaatacatgatgtatgtggtctatattatagaccatgtacatcatttattcaatgaatataaaaga-tgtatttttgcttataata 44089437  T
Q  297 ttgatc 302  Q
     |||||    
T  44089436 gtgatc 44089431  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 8383205 - 8383273
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatca 254  Q
    ||||||||||||||||| ||| ||||| | ||| || |||||||||| ||||| |||||| || |||||    
T  8383205 caaaaatctatattttagattcattcatttaataatgtacatggtctttattatagatcacatacatca 8383273  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 26836289 - 26836237
Alignment:
Q  172 gttactattatattcaaaaatctatattttaaatttattcaataaatgattta 224  Q
    ||||||| ||||  |||||||| |||||||| ||| |||||||||||||||||    
T  26836289 gttactaatataagcaaaaatccatattttagattcattcaataaatgattta 26836237  T

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Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 88987 - 88888
Alignment:
Q  173 ttactattatattcaaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatcactcattcaataaatctaa 272  Q
    |||||||||||  ||||||||||||||||| ||| ||||||| |||||| |  ||| ||| ||| | ||||||||| ||||| | | | |||||||||||    
T  88987 ttactattataaacaaaaatctatattttatattcattcaattaatgatgt--atgttctttatcatagatcatatacatcatttaataaataaatctaa 88890  T

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Target: scaffold0777 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 1086 - 1146
Alignment:
Q  72 ttcctttgcacaccttgtgctaggaaggcct--ttgttgtggtaatatatctcattttagt 130  Q
    |||||| ||||||||||||||||||||||||  |||  || ||||||||| ||||||||||    
T  1086 ttccttagcacaccttgtgctaggaaggccttgttgacgtagtaatatatttcattttagt 1146  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 6694 - 6778
Alignment:
Q  54 tcttttttaaggtttttattcctttgcacaccttgtgctaggaaggcctttgttgtggtaatatat--ctcattttagttttttc 136  Q
    |||||||| ||| |||  |||||| || || |||| ||| ||||||||| ||||||||||||||||  ||||||||||| |||||    
T  6694 tctttttttaggctttacttccttggctcatcttgagctcggaaggcctgtgttgtggtaatatataactcattttagtcttttc 6778  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 89718 - 89650
Alignment:
Q  186 caaaaatctatattttaaatttattcaataaatgatttacatggtctatattagagatcatattcatca 254  Q
    ||||||| || |||||||||||||||||| |||||| || ||| ||| ||||| |||||| || |||||    
T  89718 caaaaatttacattttaaatttattcaattaatgatgtatatgatctttattatagatcacatacatca 89650  T

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