View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7990_low_6 (Length: 353)
Name: NF7990_low_6
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7990_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 952717 - 952398
Alignment:
| Q |
18 |
ccttgttgagtgtatcgctctcaagaacatacattcgagaagggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacag |
117 |
Q |
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| T |
952717 |
ccttgttgagtgtatcgctctcaagaacataccttcgagaagggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacag |
952618 |
T |
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| Q |
118 |
tggagacaagtaatgcatcacttcctctatttttacacaattatcatttttattctacattacacgcgtttattaactatctatctatctcgtttatgtt |
217 |
Q |
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| T |
952617 |
tggagacaagtaatgcatcacttcctctatttttacacaattatcatttttattctacattacacgcctttattaactatct----atctcgtttatgtt |
952522 |
T |
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| Q |
218 |
tttaacagaattatagttgttcttaaaatgaacatgatgaaggccgatgccatggtcgtaggagaccccccaaatgcagaggatatccgtttacctaact |
317 |
Q |
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| T |
952521 |
tttaacagaattatcgttgttcttaaaatgaacatgatgaaggccgatgccatggtcgtaggagaccccccaaacgcagaggacatccgtttacctaact |
952422 |
T |
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| Q |
318 |
attctttttctcgtcctccgattc |
341 |
Q |
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| T |
952421 |
attctttttctcgtcctcccattc |
952398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 2940496 - 2940604
Alignment:
| Q |
35 |
ctctcaagaacatacattcgagaagggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacagtggagacaagtaatgca |
134 |
Q |
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| T |
2940496 |
ctctcaagaacttgctttcaagaggggtaccgtattagatcaatt-taagattgatgcaatacggttgcactactttgtacagtggagacaagaaatgca |
2940594 |
T |
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| Q |
135 |
tcacttcctc |
144 |
Q |
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| T |
2940595 |
tcactccctc |
2940604 |
T |
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