View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7990_low_7 (Length: 329)
Name: NF7990_low_7
Description: NF7990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7990_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 32266500 - 32266199
Alignment:
| Q |
10 |
gagaagaaaaagaagctgaaaatggttgggattggtggtgtttcgaataattcagattcgagggatttcagatatggttcaaagaaaatcaaatttgtag |
109 |
Q |
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| T |
32266500 |
gagaagaaaaagaagctgaaaatggttgggattggtg---tttcgaataattcagatttgagggatttcagatatggttcaaagaaaatcaaatttgtag |
32266404 |
T |
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| Q |
110 |
attcaagtgttccaaactatgaattcaagaggcctaaggtggaagcagataaatctggatttgatgattgtagaagcaaatacaataacaatgtaacaac |
209 |
Q |
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| T |
32266403 |
attcaagtgttccaaactatgaattcaagaggcctaaggtggaagcagataaatctggatttgatgattgtagaagcaaatacaataacaatgtaacaac |
32266304 |
T |
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| Q |
210 |
tatatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaagga-ttttcttttagcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
32266303 |
tatatttaagaaatcagggatgatgaataaggatttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttcttttagcaa |
32266204 |
T |
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| Q |
309 |
caaaa |
313 |
Q |
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||||| |
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| T |
32266203 |
caaaa |
32266199 |
T |
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