View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_10 (Length: 490)
Name: NF7991_high_10
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 37717427 - 37717891
Alignment:
| Q |
17 |
accatgatcattatccgacaacctgcgacgaaatcctggcaaacacttacacggtatccaattatttttgttgcagctgctaaagctaccacaataatta |
116 |
Q |
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| T |
37717427 |
accatgatcattatccgacaacctgcgacgaaatcctggcaaacacttacacggtatccaattatttttgttgcagctgctaaagctaccacaataatta |
37717526 |
T |
|
| Q |
117 |
tgtctgtcacatacgtctgatggccgcgaccactcgttcatccattgaatgtcataccacctccaaaattgtatatccccagtagaattcattaataacc |
216 |
Q |
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| T |
37717527 |
tgtctgtcacatacgtctgatggccgcgaccactcgttcatccattgaatgtcataccacctccaaaattgtatatccccagtagaattcattaataacc |
37717626 |
T |
|
| Q |
217 |
ttgatttatcgtaattaaaagatcattgtttgatggttatgtctctatacttgtgcaatgaattagaggtcgagttctccaacaagtcaagaatgatgtt |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37717627 |
ttgatttatcgtaattaaaagatcgttgtttgatggttatgtctctatacttgtgcaatgaattagaggtcgagttctccaacaagtcaagaatgatgtt |
37717726 |
T |
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| Q |
317 |
gaacatcttatctgaattgtgtccatcaaatgcccaataaagttgtgactgattgtttactctatagcttcgagggtcgcctgtttgtgccttctgaaag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37717727 |
gaacatcttatctgaattgtgtccatcaaatgcccaataaagttgtgactgattgtttactctatagcttcgagggtcgcctgtttgtgccttctgaaag |
37717826 |
T |
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| Q |
417 |
gcgaagcttccaattcctggatcgttctcatttttccaagaactcaaagttaaattgatgtccat |
481 |
Q |
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| T |
37717827 |
gcgaagcttccaattcctggatcgttctcatttttccaagaactcaaagctaaatttatgtccat |
37717891 |
T |
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