View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_11 (Length: 483)
Name: NF7991_high_11
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 466
Target Start/End: Original strand, 4160506 - 4160967
Alignment:
| Q |
4 |
aaatgataaatgggaaagataaaattattattaataatgtcgacactaattttagaagnnnnnnncttcttttattttgtgttaatcctgcggtgttcag |
103 |
Q |
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| T |
4160506 |
aaatgataaatgggaaagataaagttattattaataatgttgacactaattttagaagtttttttcttcttttattttgtgttaatcctgcggtgtttag |
4160605 |
T |
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| Q |
104 |
gaaaaagagccctcataatccgaagactgatgggagataaataaagtccgacaaaaaattgttatatctagaaattgaactcagattctcctgaacaatt |
203 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| | ||||||| |
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| T |
4160606 |
gaaaaagagccctcataattcgaagattgatgggagataaataaactccgacaaaaaattgttacatctagaaattgaactcaggttctcttaaacaatt |
4160705 |
T |
|
| Q |
204 |
gcttagttactaaattgcttgcttacnnnnnnnn---aaaactacaagtattgcttgcttacnnnnnnnnnnnnnnnnaaaactacaagttgatcagttt |
300 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
4160706 |
gcttagttactaaattccttgcttacttttattttttaaaactacaagtattgcttggttacttttttttttt-----aaaactacaagttgatcagttt |
4160800 |
T |
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| Q |
301 |
acatatgaagttatgaaagataatttgaaaatttatttatttgagt-tgtaattcaattcacataaagttattaaggaaatttatagtttttcctctatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4160801 |
acatatgaagttatgaaagataatttgaaaatttatttatttgagtctgtaattcaattcacataaagttattaaggaaatttatagtttttcctctatt |
4160900 |
T |
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| Q |
400 |
gctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagatactaaag |
466 |
Q |
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| T |
4160901 |
gctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagatactaaag |
4160967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 460
Target Start/End: Complemental strand, 4170963 - 4170867
Alignment:
| Q |
364 |
aaagttattaaggaaatttatagtttttcctctattgctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagata |
460 |
Q |
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|||||||||| ||||||||||| | |||| ||| ||||||| | || |||||||| | |||| ||||||||||| |||| |||||||||||||||| |
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| T |
4170963 |
aaagttattagggaaatttataatatttcttctcttgctttttgttactttgcagtggattttacatgattggacggatagggattgcataaagata |
4170867 |
T |
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