View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_14 (Length: 407)
Name: NF7991_high_14
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Complemental strand, 38096173 - 38095794
Alignment:
| Q |
15 |
catcaatgtgctgagcaaaagcagcaataatggaattccaaacaacagaatctccagtcaccatctcacgaaacacacctacagcttccaacaactcacc |
114 |
Q |
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| T |
38096173 |
catcactgtgctgagcaaaagcagcaataatggaattccaaacaacagaatctccagtcaccatctcacgaaacacacctacagcttccaacaactcacc |
38096074 |
T |
|
| Q |
115 |
caacttcgagtaagcatcaataagcgcactcctaacaaaaacatccgactccaaccccgctttcaatatacccgaatgcacctgtttgagatcacatagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38096073 |
caacttcgagtaagcatcaataagcgcactcctaacaaaaacatccgactccaaccccgctttcaatatacccgaatgcacctgtttgagatcacatagc |
38095974 |
T |
|
| Q |
215 |
ctctcacacgctctcaaaacagacgaaaaggtatacatattaggcatgacaccatccctaatcataaaaactaaaagcttcatagctcgatcgttgagct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38095973 |
ctctcacacgctctcaaaacagacgaaaaggtatacatattaggcatgacaccatccctaatcataaaaactaaaagcttcatagctcgatcgttgagct |
38095874 |
T |
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| Q |
315 |
tcgcataagaataagccgatatcatagtagtccacgaaacaacattccgttcaggcattttatcaaacaccatctctgct |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38095873 |
tcgcataagaataagccgatatcatagtagtccacgaaacaacattccgttcaggcattttatcaaacaccatctgtgct |
38095794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 21516177 - 21516116
Alignment:
| Q |
323 |
gaataagccgatatcatagtagtccacgaaacaacattccgttcaggcattttatcaaacac |
384 |
Q |
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| T |
21516177 |
gaataagcggaaatcatagcagtccacgacacaacattccgttcaggcatttcatcaaacac |
21516116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 4605908 - 4605948
Alignment:
| Q |
345 |
tccacgaaacaacattccgttcaggcattttatcaaacacc |
385 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| |
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| T |
4605908 |
tccacgaaacaacattcctctcaggcatttcatcaaacacc |
4605948 |
T |
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