View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_18 (Length: 369)
Name: NF7991_high_18
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 51152859 - 51152509
Alignment:
| Q |
19 |
gaaccaatgtcttggtaaatggtaataagtaatcatcataccttggacatgttaaaagttgaaaagattttaatcaatcaattcaacacactcaactata |
118 |
Q |
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| T |
51152859 |
gaaccaatgtcttggtaaatggtaataagtaatcatcataccttggacatgttaaaagttgaaaagattttaatcaatcaattcaacacactcaactata |
51152760 |
T |
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| Q |
119 |
attaggactcacctttgatttcctccaaactagaatgaaggggaattctattagcctcaagcatcttggtcacgcccttaccagactcataagccctaat |
218 |
Q |
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| T |
51152759 |
attaggactcacctttgatttcctccaaactagaatgaaggggaattctattagcctcaagcatcttggtcacgcccttaccagactcataagccctaat |
51152660 |
T |
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| Q |
219 |
gaaatggtcctcgatatctttcaaagcttcaagcaactctctcccctctgcaggtgtatcaagaacagcaagccccttttgctctccaacattttcattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51152659 |
gaaatggtcctcgatatctttcaaagcttcaagcaactctctcccctctgcaggtgtatcaagaacagcaagccccttttgctccccaacattttcattt |
51152560 |
T |
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| Q |
319 |
tcattagccacatccacaggcttcgccgtttcaacaccactcacaactttc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51152559 |
tcattagccacatccacaggcttcgccgtttcaacaccactcacaactttc |
51152509 |
T |
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