View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_26 (Length: 277)
Name: NF7991_high_26
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7583354 - 7583495
Alignment:
| Q |
1 |
ctatccccatgtataaggccgccacagcctgcttgtatatatttggccttcgactatactagnnnnnnnnnnnnnnnn-gaatatgtgagactatttaaa |
99 |
Q |
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| T |
7583354 |
ctatccccatgtataaggccgccacagcctgcttgtgtatatttggccttcgattatactagtttttttttttttttttgaatatgtgagactatttaaa |
7583453 |
T |
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| Q |
100 |
agtttttggttagaagactatttaaaagttgtttaccaacgg |
141 |
Q |
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| T |
7583454 |
agtttttggttagaagactatttaaaagttgtttaccaacgg |
7583495 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 7583523 - 7583617
Alignment:
| Q |
169 |
caactcaactaattcatcttttttacatgttaatgatcaatttaaatattg---nnnnnnnnacctccttctaagtctttacttgtttggagaat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7583523 |
caactcaactaattcatcttttttacatgttaatgatcaatttaaatattgtttttttttttacctccttctaagtctttacttgtttggagaat |
7583617 |
T |
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