View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_high_33 (Length: 254)
Name: NF7991_high_33
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7622935 - 7622714
Alignment:
| Q |
14 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622935 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtg |
7622836 |
T |
|
| Q |
114 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622835 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7622736 |
T |
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| Q |
214 |
tagtctatgttaatgcatgggc |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
7622735 |
tagtctatgttaatgcatgggc |
7622714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7627486 - 7627265
Alignment:
| Q |
14 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627486 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtg |
7627387 |
T |
|
| Q |
114 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627386 |
aaagagacattaagattattccctccatcaccattactattgccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
7627287 |
T |
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| Q |
214 |
tagtctatgttaatgcatgggc |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
7627286 |
tagtctatgttaatgcatgggc |
7627265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7634622 - 7634401
Alignment:
| Q |
14 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
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| T |
7634622 |
gatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaatattttataaatgaagatgatattgaaaagctaccttatcttaaagcagtggtg |
7634523 |
T |
|
| Q |
114 |
aaagagacattaagattattccctccatcaccattactattaccaagagaaacaatagaaagttgtaacatagatggttatgagattaaaccaaaaactc |
213 |
Q |
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||||||||| | |||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7634522 |
aaagagacaatgagattatttccaccatcaccattactagtaccaagagaaacaatagaaaattgtaacatagatggttatgagattaaaccaaaaactt |
7634423 |
T |
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| Q |
214 |
tagtctatgttaatgcatgggc |
235 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
7634422 |
tagtgtatgttaatgcatgggc |
7634401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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