View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7991_high_37 (Length: 241)
Name: NF7991_high_37
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_high_37 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 46184828 - 46184607
Alignment:
| Q |
20 |
gaggccacattcatggacaaaggttgagtttagtgtgcatattgtagcatatgaatatatagttcaatactttatcttggtttttctttgtttgataatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46184828 |
gaggccacattcatggacaaaggttgagtttagtgtgcatattgtagcatatgaatatatagttcaatactttatcttggtttttctttgtttgataatt |
46184729 |
T |
|
| Q |
120 |
cacgagacttgagagtaaaaggggtattcaaattcatcaaaaccattcttatgagttatgaagctacttcgccaaagatccacttttgtaggaagtctcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46184728 |
cacgagacttgagagtaaaaggggtattcaaattcatcaaaaccattctaatgagttatgaagctacttcgccaaagatccacttttgtaggaagtctcc |
46184629 |
T |
|
| Q |
220 |
catgcaacaatctcctactttt |
241 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46184628 |
catgcaacaatctcctactttt |
46184607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University