View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_1 (Length: 779)

Name: NF7991_low_1
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_1
NF7991_low_1
[»] chr2 (4 HSPs)
chr2 (22-450)||(43157116-43157546)
chr2 (22-450)||(38251996-38252426)
chr2 (372-768)||(38251601-38251998)
chr2 (372-768)||(43157544-43157941)
[»] chr1 (6 HSPs)
chr1 (372-768)||(11474968-11475365)
chr1 (372-768)||(11503008-11503405)
chr1 (22-416)||(28245195-28245611)
chr1 (172-450)||(11474691-11474970)
chr1 (172-450)||(11502731-11503010)
chr1 (22-171)||(11474440-11474590)
[»] chr6 (2 HSPs)
chr6 (22-416)||(10123422-10123838)
chr6 (67-416)||(19306850-19307199)
[»] chr5 (1 HSPs)
chr5 (69-416)||(25382644-25382990)
[»] chr7 (2 HSPs)
chr7 (67-416)||(22490436-22490784)
chr7 (730-768)||(27962395-27962433)
[»] chr4 (2 HSPs)
chr4 (225-416)||(48795375-48795569)
chr4 (113-232)||(48794515-48794634)
[»] chr3 (2 HSPs)
chr3 (729-768)||(49233771-49233810)
chr3 (729-768)||(49234342-49234381)
[»] chr8 (1 HSPs)
chr8 (730-768)||(14839257-14839295)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Original strand, 43157116 - 43157546
Alignment:
Q  22 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggg-ggttccggtttgcatgttgttttttgctgttcaggcgcggttttttg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  43157116 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggggggttccggtttgcatgtagttttttgctgttcaggcgcggttttttg 43157215  T
Q  121 gagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43157216 gagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgcta 43157315  T
Q  221 agttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagctt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  43157316 agttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagctt 43157415  T
Q  321 ctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43157416 ctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 43157515  T
Q  420 tagcataattttagagtgtgtaacaaatctt 450  Q
    |||||||||||||||||||||||||||||||    
T  43157516 tagcataattttagagtgtgtaacaaatctt 43157546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 22 - 450
Target Start/End: Complemental strand, 38252426 - 38251996
Alignment:
Q  22 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggggg-ttccggtttgcatgttgttttttgctgttcaggcgcggttttttg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38252426 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggggggttccggtttgcatgtagttttttgctgttcaggcgcggttttttg 38252327  T
Q  121 gagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38252326 gagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgcta 38252227  T
Q  221 agttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagctt 320  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  38252226 agttgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagctt 38252127  T
Q  321 ctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38252126 ctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 38252027  T
Q  420 tagcataattttagagtgtgtaacaaatctt 450  Q
    |||||||||||||||||||||||||||||||    
T  38252026 tagcataattttagagtgtgtaacaaatctt 38251996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 372 - 768
Target Start/End: Complemental strand, 38251998 - 38251601
Alignment:
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251998 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 38251899  T
Q  472 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgc 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  38251898 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgc 38251799  T
Q  571 atacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 670  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251798 atacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 38251699  T
Q  671 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251698 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 38251601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 372 - 768
Target Start/End: Original strand, 43157544 - 43157941
Alignment:
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157544 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 43157643  T
Q  472 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgc 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  43157644 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgc 43157743  T
Q  571 atacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 670  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157744 atacttcaatgctggttcaaggtaattttctgtatatctcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 43157843  T
Q  671 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157844 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 43157941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 372 - 768
Target Start/End: Original strand, 11474968 - 11475365
Alignment:
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474968 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 11475067  T
Q  472 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||    
T  11475068 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcctataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgc 11475167  T
Q  571 atacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 670  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475168 atacttcaatgctggttcaaggtaattttctgtatatatcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 11475267  T
Q  671 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475268 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 11475365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 372 - 768
Target Start/End: Original strand, 11503008 - 11503405
Alignment:
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503008 cttaattgtgttatagcagcctctgtcatttgttcgtttctattttgctagcataattttagagtgtgtaacaaatcttgattcttttgtttttggattg 11503107  T
Q  472 tgtgttaactctactggattgtagcctgttgaacttgactgtctgcccataggagtttgagcttttactgaatctggtgnnnnnnn-gggtgttctatgc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||    
T  11503108 tgtgttaactctactggattgtagcctgttgaacttgactgtctgccaataggagtttgagcttttactgaatctggtgttttttttgggtgttctatgc 11503207  T
Q  571 atacttcaatgctggttcaaggtaattttctgtatatctcggatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 670  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503208 atacttcaatgctggttcaaggtaattttctgtatatatcagatcaagtttgaggtaattctctacgtagttcaaagctggttttccgcctgtggactgt 11503307  T
Q  671 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503308 tgtggtgctgcagctacgttgtggcatttcttccacccctaggttctgattagtatcattgtgttccagctgcaacatattggttttgttttcttctc 11503405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 28245611 - 28245195
Alignment:
Q  22 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctggggggttccg----------------------gtttgcatgttgttttttg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||    
T  28245611 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctggggggttccgctgcaggtgcctgggggttcccgtttgcatgttgttttttg 28245512  T
Q  100 ctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  28245511 ctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggat 28245412  T
Q  200 tgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||    
T  28245411 tgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattata 28245312  T
Q  300 gcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtca 399  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28245311 gcagtagttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgttagcctaattgtgttatagcagcctctgtca 28245212  T
Q  400 tttgttcgtttctattt 416  Q
    |||||| ||||||||||    
T  28245211 tttgtttgtttctattt 28245195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 11474691 - 11474970
Alignment:
Q  172 ggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 271  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474691 ggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 11474790  T
Q  272 tgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 371  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474791 tgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 11474890  T
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11474891 cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11474970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 172 - 450
Target Start/End: Original strand, 11502731 - 11503010
Alignment:
Q  172 ggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 271  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502731 ggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 11502830  T
Q  272 tgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 371  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502831 tgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 11502930  T
Q  372 cttaattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11502931 cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 11503010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 11474440 - 11474590
Alignment:
Q  22 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggg-ggttccggtttgcatgttgttttttgctgttcaggcgcggttttttg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  11474440 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctgggggggttccggtttgcatgtagttttttgctgttcaggcgcggttttttg 11474539  T
Q  121 gagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttatttt 171  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11474540 gagcatgggaactgtgtttttgctgttaaaaccacttagtaatgttatttt 11474590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 10123838 - 10123422
Alignment:
Q  22 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctggggggtt----------------------ccggtttgcatgttgttttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||    
T  10123838 tggcgttgctgcatttttgttgttattaagttttctggtttgatacctggggggttccgctgcaggtgcctgggggttccggtttgcatgttgttttttg 10123739  T
Q  100 ctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10123738 ctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcctgttagtgtgctgtcttaggat 10123639  T
Q  200 tgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||       ||||||||||||||    
T  10123638 tgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatggtgggtattttttgcggtttgtcccatttttttcctgctgaattata 10123539  T
Q  300 gcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtca 399  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||    
T  10123538 gcagtagttttatagcagcttctgccatacattgactttgtattttgaatgcaatatacaatattttgttagcctaattgtgttatagcagcctctatca 10123439  T
Q  400 tttgttcgtttctattt 416  Q
    |||||||||||||||||    
T  10123438 tttgttcgtttctattt 10123422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 67 - 416
Target Start/End: Complemental strand, 19307199 - 19306850
Alignment:
Q  67 cctggggggttccggtttgcatgttgttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgtt 166  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19307199 cctggggggttccagtttgcatgttgttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaatcacttagtagtgtt 19307100  T
Q  167 attttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttg 266  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  19307099 attttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttg 19307000  T
Q  267 gggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatatttt 366  Q
    ||||||||||||       |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306999 gggtttgtcccatttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatatttt 19306900  T
Q  367 gctagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt 416  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  19306899 gctagcctaattgtgttatagcagcctctatcatttgttcgtttctattt 19306850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 69 - 416
Target Start/End: Original strand, 25382644 - 25382990
Alignment:
Q  69 tggggggttccggtttgcatgttgttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttat 168  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382644 tggggggtttcggtttgcaggttgttttttgctgttcaggcgcggttttttagagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttat 25382743  T
Q  169 tttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggg 268  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25382744 tttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcagctttagttccccatggtgggtattttttggg 25382843  T
Q  269 gtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgc 368  Q
    ||||||||||       |||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382844 gtttgtccca-ttttttcctgctgaattatagcagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgc 25382942  T
Q  369 tagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt 416  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  25382943 tagcctaattgtgttatagcagcctctgtcatttgttcgattctattt 25382990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 67 - 416
Target Start/End: Complemental strand, 22490784 - 22490436
Alignment:
Q  67 cctggggggttccggtttgcatgttgttttttgctgttcaggcgcggttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgtt 166  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22490784 cctggggggttccggtttgcagtttgttttttgctgttcaggcgcggttttttggagcataggaactgtgtttttgctgttaaaaccacttagtagtgtt 22490685  T
Q  167 attttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttg 266  Q
    ||||||| |  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  22490684 attttggctgctgttagtgtgatgtcttaggattgtgcagccacacctctactaagttgttatagcagcagctttggttccccatggtgggtattttttg 22490585  T
Q  267 gggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatatttt 366  Q
    ||||||||||||       |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490584 gggtttgtccca-ttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatatttt 22490486  T
Q  367 gctagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt 416  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  22490485 gctagcctaattgtgttatagcagcctctgtcatttgttcgtttgtattt 22490436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 768
Target Start/End: Complemental strand, 27962433 - 27962395
Alignment:
Q  730 tgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  27962433 tgtgttccagctgcaacatatcggttttattttcttctc 27962395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 225 - 416
Target Start/End: Original strand, 48795375 - 48795569
Alignment:
Q  225 gttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcactttt---atagcagcttc 321  Q
    ||||||||| ||  |||||||||||||| |||||||||||||||||||||||||       ||| |||||||||||||| | | ||   |||||||| ||    
T  48795375 gttatagcatcagatttagttccccatggtgggtattttttggggtttgtcccatttttttcctactgaattatagcagtagtgttgttatagcagcctc 48795474  T
Q  322 tgccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  48795475 tgccatacattgactttgtattttgaatggaatatacaatattgtgctagcctaattgtgttataacaacctctgtcatttgttcgtttctattt 48795569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 48794515 - 48794634
Alignment:
Q  113 gttttttggagcatgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacac 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||| |    
T  48794515 gttttttggagcatgggaactgtgtttttgctattaaaaccacttagtagtgttattttggcttctgttaatgtgctgtcttaggattgtgcagccacgc 48794614  T
Q  213 ctctgctaagttgttatagc 232  Q
    ||||||||||||||||||||    
T  48794615 ctctgctaagttgttatagc 48794634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 768
Target Start/End: Complemental strand, 49233810 - 49233771
Alignment:
Q  729 ttgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  49233810 ttgtgttccagctgcaacatattggttttaatttcttctc 49233771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 768
Target Start/End: Complemental strand, 49234381 - 49234342
Alignment:
Q  729 ttgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  49234381 ttgtgttccagctgcaacatattggttttaatttcttctc 49234342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 730 - 768
Target Start/End: Original strand, 14839257 - 14839295
Alignment:
Q  730 tgtgttccagctgcaacatattggttttgttttcttctc 768  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  14839257 tgtgttccagctgcaacatatcggttttattttcttctc 14839295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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