View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_11 (Length: 524)
Name: NF7991_low_11
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 1155735 - 1156226
Alignment:
| Q |
13 |
agaatatacagataatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaa |
112 |
Q |
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| T |
1155735 |
agaaaatacagataatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaa |
1155834 |
T |
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| Q |
113 |
tgatataacaataacaaaatagtagtctagaaatgtttttcattacaagcttcctctaaggctattaacatctcttaaacaaacaacataaagttaatgg |
212 |
Q |
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| T |
1155835 |
tgatataacaataacaaaatagtaatctagaaatgtttttcattacaagcttcctctaaggctct-aacatatcttatacaaacaacataaagttaatgg |
1155933 |
T |
|
| Q |
213 |
ttcccattcctcatgcctaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactc |
312 |
Q |
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| T |
1155934 |
ttcccattcctcatgcttaattacttaggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactc |
1156033 |
T |
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| Q |
313 |
tgcataaacataacagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagagaaggtgataaatct |
412 |
Q |
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| T |
1156034 |
tgcacaaacataacagtgtgaaatcagcaactgatgcataatcagtctagtgtgaaaactttaaacagtacataggtaaaacagtgaaggtgataaatct |
1156133 |
T |
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| Q |
413 |
atatagttctaactctcttatattttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggttatg |
506 |
Q |
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| T |
1156134 |
atatagttttaactctcttata-tttacctcttcggtgccaatagtgacaactttttcctccaaatcatcaagaggagttttgaaacggttatg |
1156226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 23284254 - 23284329
Alignment:
| Q |
241 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgca |
316 |
Q |
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| T |
23284254 |
gttaacaagtgacggagaccattcgttagagcaggcgttgagcttaaagctgccttgaatatgttgtgactctgca |
23284329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 23250084 - 23250179
Alignment:
| Q |
241 |
gttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatatgctgtaactctgcataaacataacagtgtgaaat |
336 |
Q |
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| T |
23250084 |
gttaacaagtgacggagaccattcgttagagcagacgttgagcataaagcagccttaaatatgttgcgactctgaaccaacacaacaatgtgaaat |
23250179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 23321509 - 23321571
Alignment:
| Q |
240 |
ggttagcaagtgacggagaccattcgttagagcagatgttgagcttaaagctgccttcaatat |
302 |
Q |
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| T |
23321509 |
ggttaacaagtgactgagaccatttgttagagcagatgttgaggttaaagcagctttcaatat |
23321571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 23250431 - 23250494
Alignment:
| Q |
437 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacg |
500 |
Q |
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| T |
23250431 |
ttacctctttgatgccgatggtgacaactttttcctccaaatcatcaataggtgttttgaaacg |
23250494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 22632706 - 22632764
Alignment:
| Q |
436 |
tttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagtttt |
494 |
Q |
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| T |
22632706 |
tttacctccttggtgccaatggtgacaactttttccttcaaatcattaagaggagtttt |
22632764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 23283041 - 23283104
Alignment:
| Q |
437 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacg |
500 |
Q |
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| T |
23283041 |
ttacctcttcgatgccaatggtgagaacttttttctccaaatcattaataggtgttttgaaacg |
23283104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 23284414 - 23284477
Alignment:
| Q |
437 |
ttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacg |
500 |
Q |
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| T |
23284414 |
ttacctctttgatgccaatggtgacaactttttcctccaaattatcaataggtattttgaaacg |
23284477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 504
Target Start/End: Complemental strand, 22626470 - 22626402
Alignment:
| Q |
436 |
tttacctcttcggtgccaatagtgacaactttttcctccaagtcatcaagaggagttttgaaacggtta |
504 |
Q |
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| T |
22626470 |
tttacctccttgatgccaattgtgataactttttccttcaattcattaagaggagtattcaaacggtta |
22626402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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