View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_14 (Length: 520)
Name: NF7991_low_14
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 51933961 - 51933474
Alignment:
| Q |
14 |
aatactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatatggtagttttttcctcactaaaactaatttttcttccctgtaatttg |
113 |
Q |
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| T |
51933961 |
aatactggctggtcagggggaaggtgtgaactctaacaatgcaactgcatatatggtagttttttcctcactaaaactaatttttcttccctgtaatttg |
51933862 |
T |
|
| Q |
114 |
gcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatgccattcattctggcagtctcttgaatgcgaaatacattaaaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51933861 |
gcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatgccattcattctggctgtctcttgaatgcgaaatacattaaaac |
51933762 |
T |
|
| Q |
214 |
tgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatcttggaccccataaacacggttagttaatacttaatattcagtata |
313 |
Q |
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| T |
51933761 |
tgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatcttggaccccataaacacggttagttaatacttaatattcagtata |
51933662 |
T |
|
| Q |
314 |
taagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagtggtttgaaaagaaggcctaccaagatacacttctgaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933661 |
taagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaactgcagtggtttgaaaagaaggcctaccaagatacacttctgaaa |
51933562 |
T |
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| Q |
414 |
ttagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaagatcaaaagttaactgaagagattgtctctg |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933561 |
ttagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaagatcaaaagttaactgaagagattgtctctg |
51933474 |
T |
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