View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_15 (Length: 505)
Name: NF7991_low_15
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 15857355 - 15857709
Alignment:
| Q |
1 |
ctatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagt |
100 |
Q |
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| T |
15857355 |
ctatttaaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattcaaaagattttaaatattgaatcaaaatcaagt |
15857454 |
T |
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| Q |
101 |
tttatggtatatataaaaattatttgaagtcatttaattgttttcataatgcttgcatagcttatagaataatcttataattatccctattacaatgaag |
200 |
Q |
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| T |
15857455 |
tttatggtatatataaaaattatttgaacacatttaattgttttcataatgcttgcatagcttatagaataatct--taattatccctattacaatgaag |
15857552 |
T |
|
| Q |
201 |
tctattgagagaagttttttaaattgaaattgttaaaattttatttgatatctacatatcacaagacaaattaaatattattgcatttatttcaattgaa |
300 |
Q |
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| T |
15857553 |
tctattgagagaagttttttaaattgaaattgttaaaattttatttgatatctacatatcacaagacaaattaaatattattgcatttatttcaattgaa |
15857652 |
T |
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| Q |
301 |
aaagattgatttttcagc-aaaaaatataaaaacaatattcagataatctatgagcc |
356 |
Q |
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| T |
15857653 |
aaagattgatttttcagcaaaaaaatataaaaacaatattcagataatctatgagcc |
15857709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 355 - 467
Target Start/End: Original strand, 15857748 - 15857860
Alignment:
| Q |
355 |
cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttccacaattatactatttccttttcttattctagggtttgaaa |
454 |
Q |
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| T |
15857748 |
cctatttcatcccattctgaagtctttgcaagaagcatgcctagtcgtcattcatcttctacaattatactatttccttttcttattctagggtttgaaa |
15857847 |
T |
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| Q |
455 |
aacaagcatgcta |
467 |
Q |
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| T |
15857848 |
aacaagcatgcta |
15857860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 31781797 - 31781859
Alignment:
| Q |
5 |
ttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcatt |
67 |
Q |
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| T |
31781797 |
ttaaaacatgatgatttttatgatcttgatggtgaaattttatttgaagaattaaaattcatt |
31781859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 37864691 - 37864791
Alignment:
| Q |
2 |
tatttaaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagtt |
101 |
Q |
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| T |
37864691 |
tatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatcaaaatcaagtt |
37864790 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
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| T |
37864791 |
t |
37864791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 17896614 - 17896670
Alignment:
| Q |
39 |
aaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaat |
95 |
Q |
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| T |
17896614 |
aaattctatttgaaaaattagaagtcattcacgaggttttaaatgttgaatcaaaat |
17896670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 48229214 - 48229314
Alignment:
| Q |
6 |
taaaacacgatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttat |
105 |
Q |
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| T |
48229214 |
taaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatgaatcaaaataaagttatat |
48229313 |
T |
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| Q |
106 |
g |
106 |
Q |
| |
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| T |
48229314 |
g |
48229314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 32393149 - 32393232
Alignment:
| Q |
220 |
taaattgaaattgttaaaattttatttgatatctac-atatcacaagacaaattaaatattattgcatttatttcaattgaaaa |
302 |
Q |
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|||||||||||||||||||| |||||||| |||||| |||| |||| | |||||| ||| | |||| || |||||||||||||| |
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| T |
32393149 |
taaattgaaattgttaaaatcttatttgagatctacaatattacaatataaattatatagtcttgctttgatttcaattgaaaa |
32393232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 30140038 - 30140090
Alignment:
| Q |
54 |
aattaaaagtcattgaagagattttaaatgttgaatcaaaatcaagttttatg |
106 |
Q |
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| T |
30140038 |
aattaaaagtcctcaaagacattttaaatgttgaatcaaaattaagttttatg |
30140090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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