View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_18 (Length: 479)
Name: NF7991_low_18
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 44911268 - 44910824
Alignment:
| Q |
17 |
aaggtgcgatgtctatagcttcggagttgtgctattggaactactatcagggcgcaatgctgttgataaaacaaaatcaggagcggaacataatctggta |
116 |
Q |
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| T |
44911268 |
aaggtgcgatgtctatagcttcggagttgtgctattggaactactatcagggcgcaatgctgttgataaaacaaaatcaggagcggaacataatctggta |
44911169 |
T |
|
| Q |
117 |
gattgggcaagaccatacttgggtgatagaagaaagttgtttcggattatggacacaagattacaagggcagtatccacaaagggcggcttatacagctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44911168 |
gattgggcaagaccatacttgggtgatagaagaaagttgtttcggattatggacacaagattacaagggcagtatccacaaagggcggcttatacagctg |
44911069 |
T |
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| Q |
217 |
caattcttgcgttacaatgtattagtgaggccaaatttagaccacaaatgtctgaggttttgacgactttggaaaacttgccagtcatcagacattcagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44911068 |
caattcttgcgttacaatgtattagtgaggccaaatttagaccacaaatgtctgaggttttgacgactttggaaaacttgccagtcatcagacattcagc |
44910969 |
T |
|
| Q |
317 |
tagtccttctagattcgaggagaaaccgttcccaggtccaataagagaaagaatctgaagcctaattctgagaaaaactagcaaaatatccgtacatatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44910968 |
tagtccttctagattcgaggagaaaccgttcccaggtccaataagagaaagaatctgaagcctaattctgagaaaaactagcaaaatatccgtacatatt |
44910869 |
T |
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| Q |
417 |
gcataggtgtaaaagaggacaatgtaatacaggtttattttctct |
461 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44910868 |
gcataggtgtaaaagaggataatgtaatacaggtttattttctct |
44910824 |
T |
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