View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_19 (Length: 429)

Name: NF7991_low_19
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_19
NF7991_low_19
[»] chr3 (4 HSPs)
chr3 (1-424)||(290371-290794)
chr3 (32-167)||(279957-280092)
chr3 (201-290)||(280207-280296)
chr3 (343-395)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (8-424)||(24525430-24525846)
chr2 (8-404)||(24532102-24532497)
chr2 (343-397)||(42436450-42436504)
chr2 (343-395)||(1979988-1980040)
chr2 (343-395)||(4789262-4789314)
chr2 (345-393)||(16107393-16107441)
chr2 (343-390)||(106466-106512)
chr2 (343-373)||(16549969-16549999)
chr2 (343-404)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (308-410)||(6015774-6015876)
chr7 (308-390)||(13316515-13316596)
chr7 (343-388)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (308-410)||(12252506-12252608)
chr1 (343-403)||(18172642-18172701)
chr1 (308-395)||(18547889-18547976)
chr1 (345-393)||(2981105-2981153)
chr1 (342-396)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (343-417)||(4442126-4442200)
chr4 (323-389)||(10266447-10266511)
chr4 (323-389)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (308-416)||(11405858-11405965)
chr8 (343-395)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (343-395)||(7732693-7732745)
chr6 (345-393)||(24585721-24585769)
chr6 (345-395)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (343-395)||(14460178-14460230)
chr5 (343-390)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 290371 - 290794
Alignment:
Q  1 ccaatttagttccatggcaaacacgtcatggttctacaggagttccaattacttggtacaagaccactttcaagctccctgaaggttcagaccttgtagt 100  Q
    ||||| |||||||||||||||||||| ||| ||||| || ||  ||||| ||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  290371 ccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacccctgaaggttcaaaccttgtagt 290470  T
Q  101 cctggatttgataggtcttcaaagaggaaaagcatgggttaacgttcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  290471 cctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttaggttttacgca 290570  T
Q  201 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |    
T  290571 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagtta 290670  T
Q  301 gcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccg 400  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290671 gcaacgaatccaaaaatttcgttaagtgggatcaaggttgcatatcatgaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccg 290770  T
Q  401 ttatctttaagaaaaataattaga 424  Q
    ||||||||||||||||||||||||    
T  290771 ttatctttaagaaaaataattaga 290794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 279957 - 280092
Alignment:
Q  32 ttctacaggagttccaattacttggtacaagaccactttcaagctccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaa 131  Q
    ||||| |||||| ||||| |||||||| ||||| |||||||||  |||||| ||| || |||  |||||| |||| |||||||| ||||| | |||| ||    
T  279957 ttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaa 280056  T
Q  132 gcatgggttaacgttcaaagtatcggaaggtattgg 167  Q
    ||||||||||| | ||||||||| ||||||||||||    
T  280057 gcatgggttaatggtcaaagtattggaaggtattgg 280092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 280207 - 280296
Alignment:
Q  201 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtc 290  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||| | | || |  ||||||||||| |||||||    
T  280207 gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtc 280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 8354176 - 8354228
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  8354176 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 24525430 - 24525846
Alignment:
Q  8 agttccatggcaaacacgtcatggttctacaggagttccaattacttggtacaagaccactttcaagctccctgaaggttcagaccttgtagtcctggat 107  Q
    ||||||||||  | ||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||  |||| |||| ||| |||||||||||||||||    
T  24525430 agttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggtcaaaccttgtagtcctggat 24525529  T
Q  108 ttgataggtcttcaaagaggaaaagcatgggttaacgttcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaa 207  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||  | |||||||||||||||||||||| | ||||||||||||||    
T  24525530 ttgataggccttcaaagaggaaaagcatgggttaatggtcaaagtattggaaggtatcagcttggtgaaaattcatcttttaggtattacgcagtgccaa 24525629  T
Q  208 ggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatga 307  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||  ||    
T  24525630 ggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatcagcatcga 24525729  T
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaa-atatataaatttataaccaataaaatgatgacaccgttatct 406  Q
    |||||||||||  |||||||||||||||||||||  ||||| |||||||||| |||| ||| ||||||| ||||||||| ||||||||||||| |||| |    
T  24525730 atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttataaaaaatatacataaattcataaccaat-aaatgatgacaccattatgt 24525828  T
Q  407 ttaagaaaaataattaga 424  Q
     || | ||||||||||||    
T  24525829 ctatgcaaaataattaga 24525846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 24532102 - 24532497
Alignment:
Q  8 agttccatggcaaacacgtcatggttctacaggagttccaattacttggtacaagaccactttcaagctccctgaaggttcagaccttgtagtcctggat 107  Q
    ||||||||||  | ||||| ||| ||||| |||||| ||||| ||||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  24532102 agttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtcaaaccttgtagtcctggat 24532201  T
Q  108 ttgataggtcttcaaagaggaaaagcatgggttaacgttcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaa 207  Q
    |||||||| |||||||||||||||||||||||||| | |||| |||| ||||||||| || |||||||||||||||||||||| | ||||||||||||||    
T  24532202 ttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaa 24532301  T
Q  208 ggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatga 307  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||  ||    
T  24532302 ggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatcagcatcga 24532401  T
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 404  Q
    |||||||||||  |||||||||||||||||||||  ||||| |||||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||    
T  24532402 atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacagaaatacataaattcataaccaat-aaatgatgacaccattat 24532497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 42436504 - 42436450
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 397  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  42436504 tatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgaca 42436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 1980040 - 1979988
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  1980040 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 4789262 - 4789314
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  4789262 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 16107393 - 16107441
Alignment:
Q  345 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 393  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  16107393 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 106512 - 106466
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 390  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  106512 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 373
Target Start/End: Original strand, 16549969 - 16549999
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaa 373  Q
    |||||||||||||||||||||||||||||||    
T  16549969 tatcataaatatttatacaaaaatatataaa 16549999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 3829243 - 3829304
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 404  Q
    ||||||||||| || |||||||| || |||||| ||||| |||||||| |||||||| ||||    
T  3829243 tatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgacaccattat 3829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 6015876 - 6015774
Alignment:
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 407  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  6015876 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 6015777  T
Q  408 taa 410  Q
    |||    
T  6015776 taa 6015774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 13316596 - 13316515
Alignment:
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaat 390  Q
    ||||||||||| |  |||||||| ||||  |||  |||| ||||||||||||||||| |||| ||||||||||| ||||||||    
T  13316596 atccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa-tatacaaatttataactaataaaat 13316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 17257432 - 17257476
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaa 388  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||    
T  17257432 tatcataaatgtttata-aaaaatatataaatttataactaataaa 17257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 12252608 - 12252506
Alignment:
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 407  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  12252608 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 12252509  T
Q  408 taa 410  Q
    |||    
T  12252508 taa 12252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 18172701 - 18172642
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgtta 403  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  18172701 tatcaaaaatatttatacaaaa-tatataaatttataaccaataaaaagaagacatcgtta 18172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 18547889 - 18547976
Alignment:
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||| | | ||||||| ||||| | |  ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  18547889 atccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 2981153 - 2981105
Alignment:
Q  345 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 393  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  2981153 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 29101796 - 29101850
Alignment:
Q  342 atatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgac 396  Q
    |||| ||||||||| ||| ||| |||||||||||||||| | |||||||||||||    
T  29101796 atattataaatattaataaaaatatatataaatttataaacgataaaatgatgac 29101850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 4442126 - 4442200
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaat 417  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||| || | ||||| |||||||||||    
T  4442126 tatcataaatatttaaacaaaaaaatataaatctataaccaaaaaaataatggcatcattatcattaagaaaaat 4442200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 10266447 - 10266511
Alignment:
Q  323 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 389  Q
    |||||||||||||| | |  ||||||||||||||||  ||||| || ||||||||||||||||||||    
T  10266447 taagtgggatcaagatcgtttatcataaatatttat--aaaaacatttaaatttataaccaataaaa 10266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 10285472 - 10285536
Alignment:
Q  323 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 389  Q
    |||||||||||||| | |  ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  10285472 taagtgggatcaagatcgtttatcataaatatttat--aaaaatatttaaattcataaccaataaaa 10285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 416
Target Start/End: Complemental strand, 11405965 - 11405858
Alignment:
Q  308 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 407  Q
    ||||||||||| |  |||||||| |||| |||   |||| ||||||||| || |||||||| |||||||||||| ||||||||||||||| | ||||| |    
T  11405965 atccagaaatttcaataagtggggtcaaagttatttatcttaaatatttcta-aaaaatatgtaaatttataacaaataaaatgatgacatcattatcat 11405867  T
Q  408 taagaaaaa 416  Q
    ||| |||||    
T  11405866 taacaaaaa 11405858  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 26588155 - 26588207
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  26588155 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 7732693 - 7732745
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  7732693 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  345 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 393  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 5090494 - 5090544
Alignment:
Q  345 tcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||||||||    
T  5090494 tcataaatatttttacaaaaatctatgaattcataacaaataaaatgatga 5090544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 14460178 - 14460230
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 395  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  14460178 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 29286097 - 29286143
Alignment:
Q  343 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 390  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  29286097 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 29286143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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