View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_2 (Length: 722)
Name: NF7991_low_2
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 212 - 707
Target Start/End: Original strand, 33605239 - 33605734
Alignment:
| Q |
212 |
tgtgcacaactataaagactaatcactcgagttttgtagatcaaaataagcgagaaactctcctaaagagtttcaacggtaatttttcataatttgtatc |
311 |
Q |
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| T |
33605239 |
tgtgcacaactgtaaagactaatcactcgagttttgtagatcaaaataagcgacaaactctcctaaagagtttcaacggtaatttttcataatttgtatc |
33605338 |
T |
|
| Q |
312 |
atcattatccttataatacattaattattaacccattaaacgacaaatagtatttccaaatnnnnnnnnnnnnnnnnnnnnncagatgttacttttcatc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |
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| T |
33605339 |
atcattatccttataatacattaattattaacccattaaacaacaaatggtatttccaaataaaagaaagaaaagaaaaagacagatgttacttttcatc |
33605438 |
T |
|
| Q |
412 |
ggcattttgttctttgaaatatttctagaatgaaacgcatagccagaaacccacgaaccttattgaagcataacatcaaggacttagaatcaagcttgct |
511 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33605439 |
ggcattttgttctttgaaatatttctagaatgaaaggcatagccagaaacccacgaaccttattgaagcataacatcaaggacttagaatcaagcttgct |
33605538 |
T |
|
| Q |
512 |
agcaaacaaagaagaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctga |
611 |
Q |
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| T |
33605539 |
agcaaacaaagaagaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctga |
33605638 |
T |
|
| Q |
612 |
gtttgttatggagtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgttatgact |
707 |
Q |
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| T |
33605639 |
gtttgttatggagaaggatgcaatcctataagatagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgttatgact |
33605734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 33605065 - 33605219
Alignment:
| Q |
17 |
catcataaatagaactcggttttcccacacgatttgtcctttgggaacccattaaccacttgaactcaattgtttgtatgttttgaagattttattagct |
116 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33605065 |
catcataaatagaactcggtttttccaaacgatttgtcctttgggagctcattaaccacttgaactcaattgtttatatgttttgaagattttattagct |
33605164 |
T |
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| Q |
117 |
aacaacgaaagttacaatgtcaatagtactttaaatatagtgtataataaggacg |
171 |
Q |
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| T |
33605165 |
aacaacgaaagttacaatgtcaatagtactttaaatatagtgtataataaggacg |
33605219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 523 - 700
Target Start/End: Complemental strand, 33448230 - 33448057
Alignment:
| Q |
523 |
aagaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagtttgttatgg |
622 |
Q |
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|||||||||||| || | | ||||| |||||| ||||||||| || | ||||| |||| |||||| ||||||| ||||||| |||||||||||| |
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| T |
33448230 |
aagaagaacacactaagtctcaattgcttgcagcacaagctaacatagcttctagtgaaagaaaacggttgtaa----ctaactttagagtttgttatga |
33448135 |
T |
|
| Q |
623 |
agtaggatgcaatcctataagctagagtatacagtagcttagcgtagtctatcaaatagaaactctataaatagttgt |
700 |
Q |
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| T |
33448134 |
tgaaggatacaatcctataagatagcgtatacaatagcttagtgtagtctatcaaataggaactctataaatacttgt |
33448057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 514 - 641
Target Start/End: Original strand, 3931335 - 3931458
Alignment:
| Q |
514 |
caaacaaagaagaagaacacagtatgccacaattacttgcaacacaagctatcacaagttctaatgaaggaaaacagttgtaattaactaacttctgagt |
613 |
Q |
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|||| |||||||||||||||| | | ||||||||||||||||||||| ||||| ||||| |||||||||||||| |||| |||||||||||||||| |
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| T |
3931335 |
caaataaagaagaagaacacaatgtaccacaattacttgcaacacaatctatctcaagtcttaatgaaggaaaacggttg----taactaacttctgagt |
3931430 |
T |
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| Q |
614 |
ttgttatggagtaggatgcaatcctata |
641 |
Q |
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|||||||| || |||||||||||||| |
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| T |
3931431 |
ttgttatgcagcgagatgcaatcctata |
3931458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 563
Target Start/End: Original strand, 10739471 - 10739562
Alignment:
| Q |
472 |
tattgaagcataacatcaaggacttagaatcaagcttgctagcaaacaaagaagaagaacacagtatgccacaattacttgcaacacaagct |
563 |
Q |
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||||||||||||||| || ||||| ||||||||||||||| | | |||||||||||||| ||| || || |||||||||||||||||| |
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| T |
10739471 |
tattgaagcataacacaaaagacttggaatcaagcttgctactagataaagaagaagaacatagtgaacctcagttacttgcaacacaagct |
10739562 |
T |
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