View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_20 (Length: 418)
Name: NF7991_low_20
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 42342418 - 42342756
Alignment:
| Q |
24 |
ggtctaaactataattagccatagaaaatttagagacattaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatga |
123 |
Q |
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| T |
42342418 |
ggtctaaactataattagccatagaaaatttagagacattaaaactccttttattttgaatcaaatggattgaaatcaaatctaaattactgtcttatga |
42342517 |
T |
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| Q |
124 |
ttatctcatgcagtgtttagaggaaacaaacgtgagagttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgt |
223 |
Q |
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| T |
42342518 |
ttatctcatgcagtgttcagaggaaacaaacgtgagagttcaaacgaaagctcagaaagcaaaagagaaactgagaggcttaagaaggaatacaagttgt |
42342617 |
T |
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| Q |
224 |
catctgtgaagaaaacatcacatggtaaagagtgaaatccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcaga |
323 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342618 |
catctgtgaagaaaacatcacatggtagagagtgaaatccttgatgcataagtgcatcttcttgtgtagttaaaactgagaaaagtgcacatgatgcaga |
42342717 |
T |
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| Q |
324 |
tcaagaaccaagaagaatatactaaagtcaaaaccagtc |
362 |
Q |
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| T |
42342718 |
tcaagaaccaagaagaatatactaaagtcaaaaccagtc |
42342756 |
T |
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