View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_21 (Length: 412)
Name: NF7991_low_21
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 103 - 394
Target Start/End: Complemental strand, 6888782 - 6888490
Alignment:
| Q |
103 |
taacattattatataatttcttgtaacttctatgaaaaccacatgatattgtaacatagtaaaatccccaaagggggtgaacctatgtagcttattactg |
202 |
Q |
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| T |
6888782 |
taacattattatataatttcttgtaacttctatgaaaaccacatgatattgtaacatagtaaaatccccaaagggggtgaacctatgtagcttattactg |
6888683 |
T |
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| Q |
203 |
tattccacgttggatttgataatgtgatagcaatgtagtatgagtaaacattggtaagttgctttcattatgggttgtgaagtcattgaaagagtatatg |
302 |
Q |
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| T |
6888682 |
tattccacgttggatttgataatgtgatagcaatgtagtatgagtaaacattggtaagttgctttcattatgggttgtgaagtcattgaaagagtatatg |
6888583 |
T |
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| Q |
303 |
tcacttgtcaaaagagtatagtggataacgactgtctctgtggttgcatatgcg-aggcacatgcatgtagtaatcaagaattcctcaattag |
394 |
Q |
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| T |
6888582 |
tcacttgtcaaaagagtatagtggagaatgactgtctctgtggttgcatatgcgaaggcacatgcttgtagtaatcaagaattcctcaattag |
6888490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 6889255 - 6889161
Alignment:
| Q |
18 |
tattgacccattattgtgatagtctaatctctctctctgaactcaaatatccattggtatagcaaatagaaatcacgtatctatataacattatt |
112 |
Q |
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| T |
6889255 |
tattgtcccattattgtgatagtctaatctctttctctgaactcaaatatccattggtatagcaaatagaaatcacctatctatataacattatt |
6889161 |
T |
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