View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7991_low_23 (Length: 404)
Name: NF7991_low_23
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_23 |
 | |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (2 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 35754591 - 35754348
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35754591 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
35754492 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35754491 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
35754392 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgtact |
262 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
35754391 |
attaacaatgatgtaaaaagggaagagataacagaacttgtact |
35754348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 35866166 - 35865926
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| || | |||||||||||||||||||||||| |||| |
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|
| T |
35866166 |
atagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcttgactcattgtggttggaattctacacttga |
35866067 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||| |
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|
| T |
35866066 |
aactatttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaa |
35865967 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
|||||| ||||||| ||||| || ||||||| ||||||||| |
|
|
| T |
35865966 |
attaactatgatgtgaaaagagaagagataagagaacttgt |
35865926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 35774714 - 35774474
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||| |||| |
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|
| T |
35774714 |
atagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcaattgggggattcttaactcattgtggttggaattctacacttga |
35774615 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
||| ||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||| |||| |||||| |
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| T |
35774614 |
aactatttcctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgttggtatttatgcaagtcttggaaaatagggatggaa |
35774515 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||||||||||| |
|
|
| T |
35774514 |
attaaccatgatgttaaaagggatgatataacagaacttgt |
35774474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 35848495 - 35848255
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| || | |||||||||||||||||||||||| |||| |
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|
| T |
35848495 |
atagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcttgactcattgtggttggaattctacacttga |
35848396 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
||| ||||| | ||||| ||||||||||||||||| ||||||| |||||||||||||||||| | |||||||||| ||||||||||| | || |||||| |
|
|
| T |
35848395 |
aactatttcctatggtgtgcctactatttgttggcctttctttgttgagcaacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaa |
35848296 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
|||||| ||||||| ||||| || ||||||| |||||||| |
|
|
| T |
35848295 |
attaactatgatgtgaaaagtgaagagataattgaacttgt |
35848255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 35735716 - 35735590
Alignment:
| Q |
55 |
aagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattgaaaccatttcttcaggtgttcctactatttgttggcc |
154 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||| | |||||| |||| |||| ||| ||||||| |
|
|
| T |
35735716 |
aagtacttgctcatccatcagttggggtatttttaactcattgtggttggaattcatcacttgagagtatttctgaaggtaagcctatgattggttggcc |
35735617 |
T |
|
| Q |
155 |
cttctttgctgagcaacaaacaaattg |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35735616 |
tttctttgctgagcaacaaacaaattg |
35735590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 35754274 - 35754216
Alignment:
| Q |
336 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacacaggttct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35754274 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacagaggttct |
35754216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 35848171 - 35848132
Alignment:
| Q |
343 |
attttggaggatcatcatacactaatttccataagttaat |
382 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
35848171 |
atttgggaggatcatcatacaataatttccataagttaat |
35848132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 240 - 480
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
240 |
atagaggatacataactagttggtgctttcaagatcaagtgcttgctcatccatcggttggagggttcctaactcattgtggttggaattctacacttga |
339 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
| | || ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||| |
|
|
| T |
340 |
agctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaa |
439 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
|||||| ||||||| |||||||| || |||| |||| |||| |
|
|
| T |
440 |
attaaccatgatgttaaaagggatgatataaaagaaattgt |
480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 240 - 480
Alignment:
| Q |
19 |
atagaggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||| |||| |
|
|
| T |
240 |
atagaggatacataactagttggtgctttcaagatcaagtgcttgctcatccatcggttggagggttcctaactcattgtggttggaattctacacttga |
339 |
T |
|
| Q |
119 |
aaccatttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaa |
218 |
Q |
| |
|
| | || ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||| |
|
|
| T |
340 |
agctatatcttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaa |
439 |
T |
|
| Q |
219 |
attaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
|||||| ||||||| |||||||| || |||| |||| |||| |
|
|
| T |
440 |
attaaccatgatgttaaaagggatgatataaaagaaattgt |
480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 1083 - 1173
Alignment:
| Q |
169 |
aacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
259 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||| | || |||||||||||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
1083 |
aacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaaccatgatgtgaaaagggaagagataaccgaacttgt |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 3381 - 3618
Alignment:
| Q |
23 |
aggatacataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattgaaacc |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||| |
|
|
| T |
3381 |
aggatacataactagttggtgctcccaagacgaagtgcttgctcatccatcagttgggggattcttgactcattgtggttggaattctacacttgaaact |
3480 |
T |
|
| Q |
123 |
atttcttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaatta |
222 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||| | |||||||| |||| |||||||||| |
|
|
| T |
3481 |
atttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaatta |
3580 |
T |
|
| Q |
223 |
acaatgatgtaaaaagggaggagataacagaacttgta |
260 |
Q |
| |
|
|| ||||||| |||||||| || ||||| ||| ||||| |
|
|
| T |
3581 |
accatgatgttaaaagggatgatataactgaaattgta |
3618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 92 - 131
Alignment:
| Q |
343 |
attttggaggatcatcatacactaatttccataagttaat |
382 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
92 |
atttgggaggatcatcatacaataatttccataagttaat |
131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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