View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_24 (Length: 404)
Name: NF7991_low_24
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 12158461 - 12158089
Alignment:
| Q |
17 |
acatcagttacaaaaa-atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctgc |
115 |
Q |
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|||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||| ||||||||||||||||||| |
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| T |
12158461 |
acattagttacaaaactatacatcgatatcaaattcaccaaagttgtaaagtcaaaactccaacaaatatcactataacacttgatattaatttctctgt |
12158362 |
T |
|
| Q |
116 |
tcaaacctcttctactaacaatttcttaactctcaaatgcttccttaacacaggtgtatttgtgttacctatgagcacaagcaaatacttgtcatgaaaa |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
12158361 |
tcaaacctcttccactaacaatttcttaactctcaaatgcttccttaacacaggtgcatttgtgttacctatgagcacaagaaaatacttgtcatggaaa |
12158262 |
T |
|
| Q |
216 |
cttcacacatggaagaaatcgacgtagaagacgttcttgttggtcctgacgcctacatatgatccacacagatgaagacacaaaatctctaggtttnnnn |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12158261 |
cttcacacacggaagaaatcgacgtagaagatgttcttgtcggtcctaacgcctacatatgatccacacagatgaagacacaaaatatctaggtttacaa |
12158162 |
T |
|
| Q |
316 |
nnncgatcgaatggttctgcgttcaatttattttgtatcaggacttcacaaaattttcgttaacatctttgat |
388 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||| |
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| T |
12158161 |
aaacgactgaatggttctgcgttcaatttattttgtaccaggacttcataaaattatggttaacatctttgat |
12158089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 12155498 - 12155639
Alignment:
| Q |
165 |
acaggtgtatttgtgttacctatgagcacaagcaaatacttgtcatgaaaacttcacacatggaagaaatcgacgtagaagacgttcttgttggtcctga |
264 |
Q |
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||||||| | |||||||||||| ||||||| |||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
12155498 |
acaggtgcacttgtgttacctacaagcacaaacaaatatttgtcatggaaacttcaaacacggaagaaatcgacgtagaagacgttcttgccggttttga |
12155597 |
T |
|
| Q |
265 |
cgcctacatatgatccacacagatgaagacacaaaatctcta |
306 |
Q |
| |
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||||||||| |||| ||||| |||||||||||||||||||| |
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|
| T |
12155598 |
tgcctacataggatcaacacaaatgaagacacaaaatctcta |
12155639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 30866986 - 30867040
Alignment:
| Q |
33 |
atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatca |
87 |
Q |
| |
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||||||||||||||||||||| |||||| ||||| ||||||| ||||| ||||| |
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|
| T |
30866986 |
atacatcaatatcaaattcactaaagttccaaagtgagaactccaacgagtatca |
30867040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 29637993 - 29637886
Alignment:
| Q |
33 |
atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctgctcaaacctcttctacta |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||||| |||| | |||||||||||| |||| |
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|
| T |
29637993 |
atacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcagcagaacgcttcatattaggttcttggttcaaacctcttccacta |
29637894 |
T |
|
| Q |
133 |
acaatttc |
140 |
Q |
| |
|
|||||||| |
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|
| T |
29637893 |
acaatttc |
29637886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 676565 - 676672
Alignment:
| Q |
33 |
atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctgctcaaacctcttctacta |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||||| |||| | |||||||||||| |||| |
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| T |
676565 |
atacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcagcagaacgcttcatattaggttcttggttcaaacctcttccacta |
676664 |
T |
|
| Q |
133 |
acaatttc |
140 |
Q |
| |
|
|||||||| |
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|
| T |
676665 |
acaatttc |
676672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 4815377 - 4815270
Alignment:
| Q |
33 |
atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctgctcaaacctcttctacta |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||| ||||| ||||| || ||||||| |||||| |||| | |||||||||||| |||| |
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|
| T |
4815377 |
atacatcaatatcaagttcaccaaagttgcaaagtgagaactccaacgagtatcatcagaacgcttcatattaggttcttggttcaaacctcttccacta |
4815278 |
T |
|
| Q |
133 |
acaatttc |
140 |
Q |
| |
|
|||||||| |
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|
| T |
4815277 |
acaatttc |
4815270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 13392518 - 13392394
Alignment:
| Q |
42 |
tatcaaattcaccaaagttgtaaagtcagaactcaaacgaatatcaccataacgcttgatattaatttctctgctcaaacctcttctactaacaatttct |
141 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||| ||| | |||||||| || |||| |||||| ||||| |||||||||||| ||| ||||||||| |
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|
| T |
13392518 |
tatcaaagtcacaaaagttgcaaagtgagaactccaacaagtatcaccagaaagcttcatattagtttcttgattcaaacctcttccacttacaatttct |
13392419 |
T |
|
| Q |
142 |
taactctcaaatgcttccttaacac |
166 |
Q |
| |
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| |||| || | ||||||||||| |
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|
| T |
13392418 |
ccattctccaaagtttccttaacac |
13392394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 23599613 - 23599565
Alignment:
| Q |
33 |
atacatcaatatcaaattcaccaaagttgtaaagtcagaactcaaacga |
81 |
Q |
| |
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|||||||||||||||||||||||||| | ||||| ||||||| ||||| |
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|
| T |
23599613 |
atacatcaatatcaaattcaccaaagctccaaagtgagaactccaacga |
23599565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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