View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_26 (Length: 397)
Name: NF7991_low_26
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 40514032 - 40513679
Alignment:
| Q |
1 |
atctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagacctgaaaggtgtgtgtttcctaaat |
100 |
Q |
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| T |
40514032 |
atctagattcatagttttggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagatctgaaaggtgtgt--ttcctaaat |
40513935 |
T |
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| Q |
101 |
tccctcaaataattttcaaaattccaagttatttag--ctaattagtcttcaagtttatgaacttttcatattatttttcataggtttgaagatgatcct |
198 |
Q |
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| T |
40513934 |
tccctcaaataattttcaaaattccaagttatttagtactaattagtcttcaagtttatgaacttttcata------------ggtttgaagatgatcct |
40513847 |
T |
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| Q |
199 |
gaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagttcgaaaaagtctcgaaagaatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513846 |
gaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagttcgaaaaagtctcgaaagaatg |
40513747 |
T |
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| Q |
299 |
aaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagtt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513746 |
aaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagtt |
40513679 |
T |
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