View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7991_low_28 (Length: 382)
Name: NF7991_low_28
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7991_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 42 - 289
Target Start/End: Complemental strand, 13779515 - 13779268
Alignment:
| Q |
42 |
cttttgctgttatttgctttactagctgttggccactgagatgaattgatatgacaaaaatctgcagtttaggtgttaaagtcgtgttgttccattggca |
141 |
Q |
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| T |
13779515 |
cttttgctgctatttgctttcctagctgtttcccaccgagaggaattgtaatgataaaaatctccaatttaggtgttaaattcgtgttgttccattgaca |
13779416 |
T |
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| Q |
142 |
tagtattcccaaataagtggtgcaaaatctgtggaaaatattgttctatcagttgtgttatttgtggtgcccatgtcctgcactgtgtggcatttcgttc |
241 |
Q |
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| T |
13779415 |
tagtattcccaaataagtggtgcaaaatctatgaaaaaatttgttctgccaattgtgtcttttgtggtgcccatgtcctgcaatgtgtggccttttgttg |
13779316 |
T |
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| Q |
242 |
gtcgtagtacttaatacgccctctgttccttttaaagtgtcgttttga |
289 |
Q |
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| T |
13779315 |
gtcgtagtatttcatactccctccgttcctttttaattttcgttttga |
13779268 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 5710020 - 5710053
Alignment:
| Q |
333 |
ttcctattatcacatcattttaatttactaatca |
366 |
Q |
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| T |
5710020 |
ttcctattatcacatcattttaatttactaatca |
5710053 |
T |
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