View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7991_low_3 (Length: 702)

Name: NF7991_low_3
Description: NF7991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7991_low_3
NF7991_low_3
[»] chr3 (8 HSPs)
chr3 (501-683)||(44788509-44788691)
chr3 (321-500)||(44789111-44789290)
chr3 (101-319)||(44789326-44789549)
chr3 (141-236)||(44792961-44793056)
chr3 (141-230)||(44797855-44797944)
chr3 (146-230)||(44801250-44801334)
chr3 (141-230)||(44805742-44805831)
chr3 (330-367)||(44792182-44792219)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 501 - 683
Target Start/End: Complemental strand, 44788691 - 44788509
Alignment:
Q  501 actaagctaacagaatcattcactaacataactgaaagtaactagtcatagctgattaaccaacagaaagcaaatcattaatgctactttcaacttttga 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44788691 actaagctaacagaatcattcactaacataactgaaagtaactagtcatagctgattaaccaacagaaagcaaatcattaatgctactttgaacttttga 44788592  T
Q  601 caataacatcgattttatttgtgatatcaaatacataatttgaggaataggagattcttttccgggttttctatattggatct 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  44788591 caataacatcgattttatttgtgatatcaaatacataatttgaggaataggagattcttttcctggtttcctatattggatct 44788509  T

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Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 321 - 500
Target Start/End: Complemental strand, 44789290 - 44789111
Alignment:
Q  321 tggatgtgataggcgcagctgcaattcccgccgctggatttccgtgggagtcgggcctatgtcaacgttcgtatttatctatctatttttatcttatgtt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44789290 tggatgtgataggcgcagctgcaattcccgccgctggatttccgtgggagtcgggcctatgtcaacgttcgtatttatctatctatttttatcttatgtt 44789191  T
Q  421 cttctaaaatgcatatttatatcaataaaagatgaccaatatagtgtgtgacaatgacaagtcctaggtacttgagtctc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  44789190 cttctaaaatgcatatttatatcaataaaagatgaccaatatagtgtgtgacaatgacaagtcctggatatttgagtctc 44789111  T

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Target: chr3; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 101 - 319
Target Start/End: Complemental strand, 44789549 - 44789326
Alignment:
Q  101 tcaaagctagtagttaaatttactaaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctc-a 199  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44789549 tcaaagctaatagataaatttactcaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaa 44789450  T
Q  200 atgagcataccctcacgtttactcgttcgtatcctacct--tctcttcatcttcctctttccctg--atatattannnnnnnnagtacctaaattaattg 295  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||        |||||||||||||||||    
T  44789449 atgagcataccctcacgtttactcgttcgtatcctacctactctcttcatcttcctctttccctgatatatattattttttttagtacctaaattaattg 44789350  T
Q  296 attaatttgcagaattcaggtaag 319  Q
    ||||||||||||||||||||||||    
T  44789349 attaatttgcagaattcaggtaag 44789326  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 44793056 - 44792961
Alignment:
Q  141 atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgtatcctac 236  Q
    |||||| |||||| |||||||||||||||| |||| | |||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||    
T  44793056 atctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaacatacctccacgtttactcgttcgtatcctac 44792961  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 44797944 - 44797855
Alignment:
Q  141 atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta 230  Q
    ||||||||||||| | ||| ||||||||||||||| | |||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  44797944 atctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctcaatgaacatacccccacgtttactcgttcgta 44797855  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 44801334 - 44801250
Alignment:
Q  146 atcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta 230  Q
    |||||||||||||||||||||||||||||| ||||||| | |||| | |||||||||| ||||||  ||||||||||||||||||    
T  44801334 atcttgcgtggcctacgattggatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta 44801250  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 44805831 - 44805742
Alignment:
Q  141 atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta 230  Q
    |||||||||||||||||||||| || ||| ||||| ||||||| |||||| | ||| |||||| ||||||| ||||||||||||||||||    
T  44805831 atctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacccccacgtttactcgttcgta 44805742  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 367
Target Start/End: Complemental strand, 44792219 - 44792182
Alignment:
Q  330 taggcgcagctgcaattcccgccgctggatttccgtgg 367  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  44792219 taggcgcagccgcaattcccgcagctggatttccgtgg 44792182  T

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